View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_55 (Length: 319)
Name: NF2748_high_55
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_55 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 66 - 293
Target Start/End: Complemental strand, 1051917 - 1051690
Alignment:
| Q |
66 |
attgaaattgaatagaaagtgaaataaacataacattgaaattgaaagtataacaggtacctgtgagagagattgaaattgcccatcttgtaaggtgtaa |
165 |
Q |
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| T |
1051917 |
attgaaattgaatagaaagtgaaataaacataacattgaaattgaaagtataataggtacctatgagagagactgaaattgcccatcttgtaaggtgtaa |
1051818 |
T |
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| Q |
166 |
gaagaggaatgggatcagcttccattttgataccaattaaatcaaattaatgtgataactgaataaattttgagagggggttgatatggtgcatctatat |
265 |
Q |
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| T |
1051817 |
gaagaggaatgggatcagcttccattttgataccaattaaatcaaattaatgtgataactgaataaattttgagagggggttgatagggtgcatctatat |
1051718 |
T |
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| Q |
266 |
ttatagtatgattgtgtatgtgtgtggt |
293 |
Q |
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| T |
1051717 |
ttatagcatgattgtgtatgtgtgtggt |
1051690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 66 - 238
Target Start/End: Complemental strand, 1032594 - 1032422
Alignment:
| Q |
66 |
attgaaattgaatagaaagtgaaataaacataacattgaaattgaaagtataacaggtacctgtgagagagattgaaattgcccatcttgtaaggtgtaa |
165 |
Q |
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| T |
1032594 |
attgaaattgaatagaaagtgaaataaacataacattgaaattgaaagtataataggtacctatgagagagactgaaattgcccatcttgtaaggtgtaa |
1032495 |
T |
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| Q |
166 |
gaagaggaatgggatcagcttccattttgataccaattaaatcaaattaatgtgataactgaataaattttga |
238 |
Q |
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| T |
1032494 |
gaagaggaatgggatcagcttccattttgataccaattaaatcaaattaatgtgataactgaataaattttga |
1032422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 1045556 - 1045497
Alignment:
| Q |
123 |
tacctgtgagagagattgaaattgcccatcttgtaaggtgtaagaagaggaatgggatca |
182 |
Q |
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| T |
1045556 |
tacctatgagatagattgaatttgcccatcttgtaaggagtaagaagaggaatgggatca |
1045497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 1049074 - 1049013
Alignment:
| Q |
122 |
gtacctgtgagagagattgaaattgcccatcttgtaaggtgtaagaagaggaatgggatcag |
183 |
Q |
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| T |
1049074 |
gtacctatgagctagattgaatttgcccatcttgtaatgtgtaagaagaggaattggatcag |
1049013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 1644400 - 1644459
Alignment:
| Q |
123 |
tacctgtgagagagattgaaattgcccatcttgtaaggtgtaagaagaggaatgggatca |
182 |
Q |
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| T |
1644400 |
tacctatgagatagattaaattttcccatcttgtaaggagtaagaagaggaatgggatca |
1644459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 1042965 - 1042912
Alignment:
| Q |
122 |
gtacctgtgagagagattgaaattgcccatcttgtaaggtgtaagaagaggaat |
175 |
Q |
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| T |
1042965 |
gtacctatgagctagattgaatttacccatcttgtaaggtgtaagaagaggaat |
1042912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 1070007 - 1069955
Alignment:
| Q |
123 |
tacctgtgagagagattgaaattgcccatcttgtaaggtgtaagaagaggaat |
175 |
Q |
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| T |
1070007 |
tacctatgagatagattgaatttacccattttgtaaggagtaagaagaggaat |
1069955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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