View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_high_61 (Length: 298)

Name: NF2748_high_61
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_high_61
NF2748_high_61
[»] chr1 (1 HSPs)
chr1 (11-298)||(4321570-4321857)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 4321570 - 4321857
Alignment:
Q  11 atgaacagaactaggtaaacaatgaaatagagtaagtaggtagaacttgaaccccaacaacaatgaccacaatgcccatacacatgtcgccatccacccc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4321570 atgaacagaactaggtaaacaatgaaatagagtaagtaggtagaacttgaaccccaacaacaatgaccacaatgcccatacacatgtcgccatccacccc 4321669  T
Q  111 aaaatcattcccttcatcgactaaattcaagaaacggagcagtgtgtcctgttcctcaagaacagcaacccataacaagtaccggtctttgtcaacttgg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4321670 aaaatcattcccttcatcgactaaattcaagaaacggagcagtgtgtcctgttccgcaagaacagcaacccataacaagtaccggtctttgtcaacttgg 4321769  T
Q  211 taccgttttgatgggctgccgttgatgttgcatacggcattcgcctctttgttgtaggctaagtaacactatttaggagacacaacaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4321770 taccgttttgatgggctgccgttgatgttgcatacggcattcgcctctttgttgtaggctaagtaacactatttaggagacacaacaa 4321857  T

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