View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_65 (Length: 290)
Name: NF2748_high_65
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 144 - 283
Target Start/End: Original strand, 6031848 - 6031987
Alignment:
| Q |
144 |
tttcttcatgatcctactatttctgttccctacacacaaacaactcataatcatgttccaattaatcctgatacactaacaaattgggctgttgctgact |
243 |
Q |
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| T |
6031848 |
tttcttcatgatcctactatttctgttccctacacacaaacaactcataatcatgttccaattaatcctgatacactaacaaattgggctgttgctgact |
6031947 |
T |
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| Q |
244 |
atgcagctatgttgaaacaagatctaagtggttcatctca |
283 |
Q |
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| T |
6031948 |
atgcagctatgttgaaacaagatctaagtggttcttctca |
6031987 |
T |
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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 6031720 - 6031802
Alignment:
| Q |
25 |
gttataatcctaattcatcttcttcttcacactcataccctccttttacttttcttacccctgatcaaaatgcttcttctaat |
107 |
Q |
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| T |
6031720 |
gttataatcctaattcatcttcttcttcacactcataccctccttttacttttcttacccctgatcaaaatgcttcttctaat |
6031802 |
T |
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