View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_72 (Length: 277)
Name: NF2748_high_72
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_72 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 374155 - 373909
Alignment:
| Q |
19 |
gtagtttcttttgattatgaaaaaggatgagttcattagctggaaacaaacaatcatgttaagaagaaatgtagataacttgttgatacattgatcggta |
118 |
Q |
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| T |
374155 |
gtagtttcttttgattatgaaaaaggatgagttcattagctggaaacaaacaatcatgttaagaagaaatgtagataacttgttgatacattgatcggta |
374056 |
T |
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| Q |
119 |
attcgacgatcaagagattcctggaaatcataatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaatgagggtgtcaa |
218 |
Q |
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| T |
374055 |
attcgacgatcaagagattcctggaaatcataatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaatgagggtgtcaa |
373956 |
T |
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| Q |
219 |
actagatctacatattttcttttcaataccaaaggtaatggaattca |
265 |
Q |
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| T |
373955 |
accagatctacatattttcttttcaataccaaaggtaatggaattca |
373909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 1743161 - 1743218
Alignment:
| Q |
150 |
aatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaat |
207 |
Q |
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| T |
1743161 |
aatcaatagcatttaatcttttcaagctcacgaatgaatcgatcaaatccaagttaat |
1743218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 2007221 - 2007164
Alignment:
| Q |
150 |
aatcaataacatttaatcttttgaagctcacgaatgaaacgatcaaattcaagttaat |
207 |
Q |
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| T |
2007221 |
aatcaatagcttttaatctcttcaagctcacgaatgaatcgatcaaatccaagttaat |
2007164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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