View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_high_79 (Length: 266)

Name: NF2748_high_79
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_high_79
NF2748_high_79
[»] chr3 (11 HSPs)
chr3 (1-256)||(11610503-11610758)
chr3 (130-181)||(11252045-11252096)
chr3 (131-180)||(34185052-34185101)
chr3 (127-179)||(20503536-20503588)
chr3 (126-181)||(40052381-40052436)
chr3 (131-181)||(27505320-27505370)
chr3 (131-181)||(55401144-55401194)
chr3 (136-180)||(1509637-1509681)
chr3 (133-181)||(4987222-4987270)
chr3 (129-165)||(8842414-8842450)
chr3 (131-179)||(40993275-40993323)
[»] chr4 (11 HSPs)
chr4 (131-179)||(11596297-11596345)
chr4 (124-181)||(24343582-24343639)
chr4 (129-210)||(37203292-37203373)
chr4 (124-179)||(715538-715593)
chr4 (124-179)||(752864-752919)
chr4 (131-181)||(23292926-23292976)
chr4 (131-180)||(18513175-18513224)
chr4 (131-179)||(12708213-12708261)
chr4 (130-181)||(18966578-18966629)
chr4 (131-177)||(12895214-12895260)
chr4 (136-181)||(3712458-3712503)
[»] chr1 (17 HSPs)
chr1 (131-210)||(2218267-2218347)
chr1 (131-175)||(30359440-30359484)
chr1 (131-175)||(31694639-31694683)
chr1 (132-179)||(5927281-5927328)
chr1 (131-181)||(6427544-6427594)
chr1 (131-181)||(46940748-46940798)
chr1 (131-180)||(29144320-29144369)
chr1 (131-179)||(47989579-47989627)
chr1 (133-180)||(42359391-42359438)
chr1 (131-181)||(9828124-9828174)
chr1 (131-165)||(16812641-16812675)
chr1 (131-181)||(37598900-37598950)
chr1 (131-181)||(40917829-40917879)
chr1 (186-252)||(46348390-46348456)
chr1 (133-181)||(1486646-1486694)
chr1 (131-179)||(1815328-1815376)
chr1 (127-179)||(5944365-5944417)
[»] chr7 (12 HSPs)
chr7 (138-203)||(18215144-18215210)
chr7 (131-181)||(30813866-30813916)
chr7 (131-181)||(5409771-5409821)
chr7 (131-181)||(29763129-29763179)
chr7 (131-179)||(1401094-1401142)
chr7 (126-181)||(9778574-9778629)
chr7 (131-181)||(598277-598327)
chr7 (131-181)||(43027404-43027454)
chr7 (131-180)||(6490786-6490835)
chr7 (136-181)||(13770765-13770810)
chr7 (128-177)||(24339726-24339775)
chr7 (132-180)||(32287404-32287452)
[»] chr2 (13 HSPs)
chr2 (121-181)||(35056948-35057008)
chr2 (131-181)||(37419823-37419873)
chr2 (130-179)||(11223792-11223841)
chr2 (129-181)||(26769591-26769643)
chr2 (130-181)||(37559046-37559097)
chr2 (133-179)||(2438661-2438707)
chr2 (131-177)||(15907851-15907897)
chr2 (131-181)||(38117099-38117149)
chr2 (131-165)||(44635578-44635612)
chr2 (186-256)||(20473304-20473374)
chr2 (131-179)||(18840953-18841001)
chr2 (129-157)||(24975253-24975281)
chr2 (132-180)||(44860401-44860449)
[»] scaffold0793 (1 HSPs)
scaffold0793 (124-179)||(4814-4869)
[»] scaffold0003 (1 HSPs)
scaffold0003 (127-181)||(241674-241728)
[»] chr8 (4 HSPs)
chr8 (131-181)||(22197671-22197721)
chr8 (124-181)||(29510226-29510283)
chr8 (185-256)||(22197748-22197819)
chr8 (131-180)||(22652057-22652106)
[»] chr5 (8 HSPs)
chr5 (131-181)||(35017112-35017162)
chr5 (130-179)||(19820327-19820376)
chr5 (124-181)||(32766865-32766922)
chr5 (131-181)||(14873591-14873641)
chr5 (126-176)||(15086552-15086602)
chr5 (131-179)||(17123119-17123166)
chr5 (133-181)||(21190998-21191046)
chr5 (129-165)||(22423762-22423798)
[»] chr6 (11 HSPs)
chr6 (131-180)||(7248439-7248488)
chr6 (131-179)||(32511606-32511654)
chr6 (128-167)||(5569832-5569871)
chr6 (131-165)||(426478-426512)
chr6 (134-183)||(9025448-9025497)
chr6 (128-181)||(34595203-34595256)
chr6 (129-181)||(7625185-7625237)
chr6 (131-179)||(7977770-7977818)
chr6 (129-177)||(8714064-8714112)
chr6 (131-179)||(10339054-10339102)
chr6 (132-180)||(31959220-31959268)
[»] scaffold0053 (1 HSPs)
scaffold0053 (129-181)||(8867-8919)
[»] scaffold0086 (1 HSPs)
scaffold0086 (131-181)||(3008-3058)
[»] scaffold0652 (1 HSPs)
scaffold0652 (132-181)||(403-452)
[»] scaffold0450 (1 HSPs)
scaffold0450 (128-181)||(8561-8614)
[»] scaffold0136 (1 HSPs)
scaffold0136 (131-179)||(3778-3826)
[»] scaffold0020 (1 HSPs)
scaffold0020 (131-183)||(135263-135315)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11610758 - 11610503
Alignment:
Q  1 caacacatatagttacgctcgaacacttcaacttaattataactaatgtctacgtgtctctaagtgtctctattagatgtatatgtttgtgtcggtgctt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  11610758 caacacatatagttacgctcaaacacttcaacttaattataactaatgtctacgtgtctctaagtgtctctgttagatgtctatgtttgtgtcggtgctt 11610659  T
Q  101 catcgtactgcaaagtagtatactaataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacgacttgacacttgtaactac 200  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  11610658 cattgtactgcaaagtagtaaactaataatctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacgacttgacacttgtaactac 11610559  T
Q  201 actaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtg 256  Q
    ||| |||||| |||       |||||||||||||||||||| ||||||| ||||||    
T  11610558 actgaattatgtgatttttttaaattattagcggtgttggcgtgtcagtatctgtg 11610503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 11252096 - 11252045
Alignment:
Q  130 tctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||| |||||||||| |||| |||||||||||||| ||||||||    
T  11252096 tctatgaagcacagacactcctcggattaggcgtgttccgatgccggacacg 11252045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 34185052 - 34185101
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    |||||||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 20503588 - 20503536
Alignment:
Q  127 taatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||||||| |||| ||||||| ||| |||| ||||    
T  20503588 taatctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagaca 20503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 40052436 - 40052381
Alignment:
Q  126 ataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||| |||||||||||| ||||||||| |||| ||||||| ||| |||||||||||    
T  40052436 ataacctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacg 40052381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 27505370 - 27505320
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||| ||| ||| |||||||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacg 27505320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 55401194 - 55401144
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| |||||||  || |||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacg 55401144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 1509681 - 1509637
Alignment:
Q  136 aagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    ||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  1509681 aagcacggacactcctccgattaggcgtgtaccggtgtcggacac 1509637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 4987222 - 4987270
Alignment:
Q  133 atgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||| ||||||||||||| |||| ||||||| ||| |||||||||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacg 4987270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 8842450 - 8842414
Alignment:
Q  129 atctatgaagcacggacactcctcagatttggcgtgt 165  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8842450 atctatgaagcacggacactcctcggattaggcgtgt 8842414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 40993275 - 40993323
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||| ||||||||||| |||| ||||||| ||| |||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggaca 40993323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 11596297 - 11596345
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11596345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 24343639 - 24343582
Alignment:
Q  124 taataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||| ||||||||||||||||||||||||||| | ||||||| ||| |||||||||||    
T  24343639 taatgatctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacg 24343582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 37203373 - 37203292
Alignment:
Q  129 atctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacgacttgacacttgtaactacactaaattat 210  Q
    |||||||||||||||||||| ||| |||| | ||||| ||| |||||||| ||||   |||||||||| |||||||||||||    
T  37203373 atctatgaagcacggacacttctcggattagacgtgtcccggtgtcggacccgacactacacttgtaattacactaaattat 37203292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 715538 - 715593
Alignment:
Q  124 taataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||  |||||||||    
T  715538 taataatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 752864 - 752919
Alignment:
Q  124 taataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||  |||||||||    
T  752864 taataatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 23292926 - 23292976
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 23292976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 18513175 - 18513224
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    ||||||||||||||||||||||||||| ||||||| | | ||||||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacac 18513224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 12708261 - 12708213
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    ||||||||||||||| |||||| |||| |||||||||||||||| ||||    
T  12708261 ctatgaagcacggacgctcctcggattaggcgtgttccgatgtccgaca 12708213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 18966629 - 18966578
Alignment:
Q  130 tctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| ||||| ||||| | ||| |||||||||||    
T  18966629 tctatgaagcacggacactccttagattaggcgtatcccgttgtcggacacg 18966578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 12895214 - 12895260
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcgga 177  Q
    |||||||||||| ||||||||| |||| ||||||| |||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccgatgtcgga 12895260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 3712458 - 3712503
Alignment:
Q  136 aagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||    
T  3712458 aagcacggacactcctcagattagccgtgtcccggtgtcggacacg 3712503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 2218347 - 2218267
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacgac-ttgacacttgtaactacactaaattat 210  Q
    ||||||||||||||||||||||||||| ||||||| |   |||||||||||||   ||||||||||| |||||||||||||    
T  2218347 ctatgaagcacggacactcctcagattaggcgtgtcctagtgtcggacacgacaccgacacttgtaattacactaaattat 2218267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 30359484 - 30359440
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcg 175  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||    
T  30359484 ctatgaagcacggacactcctcagatttggcgtgtcccgttgtcg 30359440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 31694639 - 31694683
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcg 175  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  31694639 ctatgaagcacggacactcctcagattaggcgtgttccggtgtcg 31694683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 5927281 - 5927328
Alignment:
Q  132 tatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  5927281 tatgaagcacggacactcctcagattaggcatgtttcgatgtcggaca 5927328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 6427594 - 6427544
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||||||||||||||||| ||||||| ||||||| ||| |||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacg 6427544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 46940748 - 46940798
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||| ||||||||| |||| ||||||||||| |||||||||||    
T  46940748 ctatgaagcacgaacactcctcggattaggcgtgttccggtgtcggacacg 46940798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 29144320 - 29144369
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    ||||||||||||||||||| || |||| ||||||||||| ||||||||||    
T  29144320 ctatgaagcacggacactcttcggattaggcgtgttccggtgtcggacac 29144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 47989627 - 47989579
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||| |||| ||||||| |||||||| ||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcccgatgtcagaca 47989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 42359391 - 42359438
Alignment:
Q  133 atgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    |||||||||||||||||||| |||| ||||||| ||| ||||||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 42359438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 9828174 - 9828124
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| | ||||| ||| |||||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacg 9828124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 16812675 - 16812641
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgt 165  Q
    ||||||||||||||||||||||||||| |||||||    
T  16812675 ctatgaagcacggacactcctcagattaggcgtgt 16812641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 37598950 - 37598900
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||| ||  |||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacg 37598900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 40917879 - 40917829
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||| ||||| |||| ||||||| ||| |||||||||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacg 40917829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 46348390 - 46348456
Alignment:
Q  186 gacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtc 252  Q
    ||||||||||| |||||||||||||||||       ||||||||||| |||| ||| ||||||||||    
T  46348390 gacacttgtaattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtc 46348456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 1486646 - 1486694
Alignment:
Q  133 atgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||||||| |||||||||| |||| ||||||| ||| |||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacg 1486694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 1815376 - 1815328
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    ||||||| ||||| ||||||||||||| ||||||| ||| |||||||||    
T  1815376 ctatgaatcacggtcactcctcagattaggcgtgtcccggtgtcggaca 1815328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 5944417 - 5944365
Alignment:
Q  127 taatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||| ||||||||| |||| ||||| | ||| |||||||||    
T  5944417 taatctatgaagcacgaacactcctcggattaggcgtatcccggtgtcggaca 5944365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 18215144 - 18215210
Alignment:
Q  138 gcacggacactcctcagatttggcgtgttccgatgtcggacacgac-ttgacacttgtaactacact 203  Q
    |||||||||||||||||||| ||||||| ||| |||||||||||||   ||||||||||||||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcggacacgacaccgacacttgtaactacact 18215210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 30813916 - 30813866
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||||| |||||||||||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgttctgatgtcggacacg 30813866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 5409771 - 5409821
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 5409821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 29763129 - 29763179
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||| | |||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacg 29763179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 1401142 - 1401094
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||| |||||||||||||||| || |||| |||||||||||||    
T  1401142 ctatgaagcatggacactcctcagattaggtgtgtcccgatgtcggaca 1401094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 9778629 - 9778574
Alignment:
Q  126 ataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||| |||||||||||||||||||||  |||| ||||||| ||| |||||||||||    
T  9778629 ataacctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacg 9778574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 598327 - 598277
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||| ||| |||| ||||||| ||| |||||||||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 598277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 43027404 - 43027454
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||||||||||||||||| || |||| ||||||| ||| |||||||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacg 43027454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 6490835 - 6490786
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    |||||||||||||||||||||| ||||  |||||| ||| ||||||||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 13770810 - 13770765
Alignment:
Q  136 aagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||| || |||| ||||||||||| |||||||||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacg 13770765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 24339775 - 24339726
Alignment:
Q  128 aatctatgaagcacggacactcctcagatttggcgtgttccgatgtcgga 177  Q
    |||||||||||||||| |||||||| |||| ||||||| ||| |||||||    
T  24339775 aatctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcgga 24339726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 32287404 - 32287452
Alignment:
Q  132 tatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    ||||||||||||||||||||| |||| || |||| ||| ||||||||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 32287452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 35057008 - 35056948
Alignment:
Q  121 tactaataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||| |  |||||||||||    
T  35057008 tacttataagctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacg 35056948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 37419873 - 37419823
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 37419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 11223792 - 11223841
Alignment:
Q  130 tctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||| ||||    
T  11223792 tctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 26769643 - 26769591
Alignment:
Q  129 atctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||||| |||| ||||||| ||  |||||||||||    
T  26769643 atctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacg 26769591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 37559097 - 37559046
Alignment:
Q  130 tctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||||||||||||||||||||| ||||  |||||| ||| |||||||||||    
T  37559097 tctatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacg 37559046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 2438661 - 2438707
Alignment:
Q  133 atgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggaca 2438707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 15907851 - 15907897
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcgga 177  Q
    ||||||||||||||||||| ||||||| ||||||| ||| |||||||    
T  15907851 ctatgaagcacggacactcatcagattgggcgtgtcccggtgtcgga 15907897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 38117099 - 38117149
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||||||||||||||| |||| |||| ||||||| ||| |||||||||||    
T  38117099 ctatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacg 38117149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 44635612 - 44635578
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgt 165  Q
    ||||||||||||||||||||||||||| |||||||    
T  44635612 ctatgaagcacggacactcctcagattaggcgtgt 44635578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 20473374 - 20473304
Alignment:
Q  186 gacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtg 256  Q
    ||||||||||| |||||| ||||||||||       ||||||||||  |||| ||||||||||||||||||    
T  20473374 gacacttgtaattacactgaattatatgagttttttaaattattagttgtgtcggcatgtcagtgtctgtg 20473304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 18840953 - 18841001
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||| |||| || |||| ||| |||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 18841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 24975253 - 24975281
Alignment:
Q  129 atctatgaagcacggacactcctcagatt 157  Q
    |||||||||||||||||||||||||||||    
T  24975253 atctatgaagcacggacactcctcagatt 24975281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 44860449 - 44860401
Alignment:
Q  132 tatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    |||||||||||||||||||||  ||| || |||| ||||||||||||||    
T  44860449 tatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacac 44860401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 4814 - 4869
Alignment:
Q  124 taataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    ||||||||||||||||||||||||||||| |||| ||||||| ||  |||||||||    
T  4814 taataatctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 241728 - 241674
Alignment:
Q  127 taatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| ||| |||| ||||||| ||| |||||||||||    
T  241728 taatctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacg 241674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 22197671 - 22197721
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||| |||||||||||||||||||||| |||||| |||| |||||||||||    
T  22197671 ctataaagcacggacactcctcagattaggcgtgatccggtgtcggacacg 22197721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 29510226 - 29510283
Alignment:
Q  124 taataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||| |||||||||||||||||||||| |||| || |||| ||| |||||||||||    
T  29510226 taataacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 22197748 - 22197819
Alignment:
Q  185 tgacacttgtaactacactaaattatatgannnnnnnaaattattagcggtgttggcatgtcagtgtctgtg 256  Q
    |||||||||||| ||||||||||||| |||       ||||||||||| |||||||| ||| ||||||||||    
T  22197748 tgacacttgtaattacactaaattatgtgaatttttcaaattattagctgtgttggcgtgttagtgtctgtg 22197819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 22652106 - 22652057
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    |||||||||||||||||||||| |||| | ||||| ||| ||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 22652057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 35017162 - 35017112
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||| ||||||| |||||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgtcccgatgttggacacg 35017112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 19820327 - 19820376
Alignment:
Q  130 tctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    ||||||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  19820327 tctatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 32766865 - 32766922
Alignment:
Q  124 taataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||||||||||||||| | ||| | | | |||||||||||    
T  32766865 taataatctatgaagcacggacactcctcagattagacgtatcctggtgtcggacacg 32766922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 14873641 - 14873591
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||| |||| ||||||| ||| ||| |||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccggtgttggacacg 14873591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 15086602 - 15086552
Alignment:
Q  126 ataatctatgaagcacggacactcctcagatttggcgtgttccgatgtcgg 176  Q
    |||| ||||||||||  |||||||||| |||| ||||||||||||||||||    
T  15086602 ataacctatgaagcaaagacactcctcggattaggcgtgttccgatgtcgg 15086552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 17123166 - 17123119
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcccg-tgtcggaca 17123119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 21190998 - 21191046
Alignment:
Q  133 atgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||| |||| ||||||| |||  ||||||||||    
T  21190998 atgaagcacggacactcctcggattaggcgtgtcccggagtcggacacg 21191046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 22423762 - 22423798
Alignment:
Q  129 atctatgaagcacggacactcctcagatttggcgtgt 165  Q
    |||||||||||||||||||||||| |||| |||||||    
T  22423762 atctatgaagcacggacactcctcggattaggcgtgt 22423798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 7248488 - 7248439
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    |||||||||||||||||||||| |||||| ||||| ||| ||||||||||    
T  7248488 ctatgaagcacggacactcctcggatttgacgtgtcccggtgtcggacac 7248439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 32511606 - 32511654
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||| |||| |||||| ||||||||| ||||    
T  32511606 ctatgaagcacggacactcctccgattaggcgtgctccgatgtcagaca 32511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 167
Target Start/End: Complemental strand, 5569871 - 5569832
Alignment:
Q  128 aatctatgaagcacggacactcctcagatttggcgtgttc 167  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  5569871 aatcgatgaagcacggacactcctcagattaggcgtgttc 5569832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 426478 - 426512
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgt 165  Q
    ||||||||||||||||||||||||||| |||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgt 426512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 9025448 - 9025497
Alignment:
Q  134 tgaagcacggacactcctcagatttggcgtgttccgatgtcggacacgac 183  Q
    ||||||||||||||| ||| |||| ||||||| ||| |||||||||||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgac 9025497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 34595256 - 34595203
Alignment:
Q  128 aatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||||||||||||||||||||||| |||| || |||| ||| |||| ||||||    
T  34595256 aatctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacg 34595203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 7625237 - 7625185
Alignment:
Q  129 atctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||| ||||||||  ||||  |||||||||| |||||||||||    
T  7625237 atctatgaagcacgaacactccttggattaagcgtgttccggtgtcggacacg 7625185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 7977770 - 7977818
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||| |||||||| ||||| |||||||| || |||||||||    
T  7977770 ctatgaagcacgaacactccttagattaggcgtgtttcgttgtcggaca 7977818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 8714112 - 8714064
Alignment:
Q  129 atctatgaagcacggacactcctcagatttggcgtgttccgatgtcgga 177  Q
    ||||||||||||  |||||||||| |||| ||||||| |||||||||||    
T  8714112 atctatgaagcaaagacactcctcggattgggcgtgtcccgatgtcgga 8714064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 10339054 - 10339102
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||||||||||||||| |||| ||||||| ||  |||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggaca 10339102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 31959268 - 31959220
Alignment:
Q  132 tatgaagcacggacactcctcagatttggcgtgttccgatgtcggacac 180  Q
    ||||||||||||||||||||| |||| || |||| ||| ||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 8919 - 8867
Alignment:
Q  129 atctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||| |||||||||||| |||||||  || |||||||||||    
T  8919 atctatgaagcacggagactcctcagattaggcgtgtctcggtgtcggacacg 8867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 3058 - 3008
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||| |||||||||||||||| |||| ||||||||||| ||||| |||||    
T  3058 ctatggagcacggacactcctcggattaggcgtgttccggtgtcgaacacg 3008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 403 - 452
Alignment:
Q  132 tatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    ||||||||||||||||||||| |||| || |||| ||| |||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 8561 - 8614
Alignment:
Q  128 aatctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacg 181  Q
    |||||||||||||||||||||||||  ||| ||||||| ||  |||||||||||    
T  8561 aatctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacacg 8614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 3778 - 3826
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggaca 179  Q
    |||||||||| ||||||||||| |||| |||||||  ||||||||||||    
T  3778 ctatgaagcaaggacactcctcggattaggcgtgtctcgatgtcggaca 3826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 135263 - 135315
Alignment:
Q  131 ctatgaagcacggacactcctcagatttggcgtgttccgatgtcggacacgac 183  Q
    |||||||||||| |||| ||||||||| ||||||| | | |||||||||||||    
T  135263 ctatgaagcacgaacacgcctcagattaggcgtgtcctggtgtcggacacgac 135315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University