View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_8 (Length: 635)
Name: NF2748_high_8
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 135 - 612
Target Start/End: Complemental strand, 25672027 - 25671546
Alignment:
| Q |
135 |
caatattattgagtaaagtaatcatcattttacaagttagttttataggataaaattttgccacaattgccatgcctaatcgatactgttatacaaaaat |
234 |
Q |
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||||| |||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
25672027 |
caataatattgagtaaagtaatcaacatcttacaaatcagttttataggataaaattttgccacaattgccatgcctaatcgatactgatgtacaaaaat |
25671928 |
T |
|
| Q |
235 |
aatcttgcaatctttaataagttgatgacaatcctaattccacttttatttttaaaccaaacccatcattctcaacgaaaagtcaaaagtttaagat-nn |
333 |
Q |
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| T |
25671927 |
aatcttgcaatctttaataagttgatgacaatcctaattccacttgtatttttaaaccaaacccatcattctcaacgaaaagtcaaaagtttaagataaa |
25671828 |
T |
|
| Q |
334 |
nnnnnncttccctttctagattggtagttaaatactagtacaacttgctatgagaacccaatgacagtttacacgtagcttccaaatattcaaaccaagt |
433 |
Q |
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| T |
25671827 |
aaaaaacttccctttctagattggtagttaaatactagtacaacttgctatgagaacccaatgacagtttacacgtagcttccaaatattcaaaccaagt |
25671728 |
T |
|
| Q |
434 |
atacaacttttcaactccatgttaattcatttcattatatagtaaccnnnnnnnnnnnnnctgattcatctcaaacaaatactagttttgtacatactga |
533 |
Q |
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| T |
25671727 |
atacaacttttcaactccatgttaattcatttcattatatagtaaccaaaaaatcaaaaactgattcatctcaaacaaatactagttttgtacatactga |
25671628 |
T |
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| Q |
534 |
aaatcctgttaaaatttcatcaaaacttgaagaacaagacttgaacaaaga---atcatggcagcatcaccagcataccaag |
612 |
Q |
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| T |
25671627 |
aaatcctgttaaaatttcatcaaaacttgaagaacaagacttgaacaaagaactaccatggcagcatcaccagcataccaag |
25671546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 25672218 - 25672093
Alignment:
| Q |
4 |
atgtcgaagaatatatggtttgaacttgtgtttataaatggagacaatccttgtctcgtaagtcagttttgcagagttatgttagcatcaacgacaattt |
103 |
Q |
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|||||||| || |||||||||||||||||||||| || |||||||||| |||||||| ||||||||||||| || ||| ||| ||||||||||||| |
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| T |
25672218 |
atgtcgaataaaatatggtttgaacttgtgtttacaagtggagacaatacttgtctcataagtcagttttgtagggttgtgt-----tcaacgacaattt |
25672124 |
T |
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| Q |
104 |
ctaagatgaaattaaaatcttcttcaagatc |
134 |
Q |
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|||||| |||||||| |||||||||||||| |
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| T |
25672123 |
ttaagataaaattaaagtcttcttcaagatc |
25672093 |
T |
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