View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_high_93 (Length: 246)
Name: NF2748_high_93
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_93 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 52712267 - 52712030
Alignment:
| Q |
1 |
atagaagattttaatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgac |
100 |
Q |
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| T |
52712267 |
atagaagatttttatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctccaaaccatgaa |
52712168 |
T |
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| Q |
101 |
gaggatgagttttgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712167 |
gaggatgagttttgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatgga |
52712068 |
T |
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| Q |
201 |
gactttgtttcttcctcaatttcaaactctctttctct |
238 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
52712067 |
gactttgtttcttcctcaatttcaaagtctctttctct |
52712030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 52717852 - 52717627
Alignment:
| Q |
13 |
aatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgacgaggatgagttt |
112 |
Q |
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|||||| |||||||| |||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||| ||||||| |||||| ||| | |
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| T |
52717852 |
aatacctaaatgatacaagagaccaaacaagtcctataagacttgagtaggtattaggatttctgatgagttttctccaaaccatgatgaggattagtct |
52717753 |
T |
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| Q |
113 |
tgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttct |
212 |
Q |
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|||||| ||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | || |
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| T |
52717752 |
tgtcatgacacttgctggtggcatctgtgtatttttgcttacatcccctcctccttccaagtccatcttcttctggctaatatatggagactttactgct |
52717653 |
T |
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| Q |
213 |
tcctcaatttcaaactctctttctct |
238 |
Q |
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||||||||||||| || |||||||| |
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| T |
52717652 |
tcctcaatttcaacatccctttctct |
52717627 |
T |
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