View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2748_high_99 (Length: 238)
Name: NF2748_high_99
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_high_99 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4825939 - 4825719
Alignment:
| Q |
1 |
catcctttacattatcaattacattcacaatgtatggctatgttaagagcaaaatatatgtgttatatccatgcaaataacgatagaaaatcgtgatata |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4825939 |
catcatttacattatcaattacattcacaatgtatggctatgttaagagcaaaatatatgtgttatatccatgcaaataacgatagaaaatcgtgatata |
4825840 |
T |
|
| Q |
101 |
taagctccagatttgcaaatatacttatcactttaaaagggactctaaagatattctaattggtttaaaggttccatagcatcaaatattattgggaaaa |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
4825839 |
tgtgctccagatttgcaaatatacttatcactttaaaagggactctaaagatattctaattggtttaaaggttccttagcatcaaatattattggaaaaa |
4825740 |
T |
|
| Q |
201 |
caaccatttttatccttcact |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4825739 |
caaccatttttatccttcact |
4825719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 4852057 - 4851955
Alignment:
| Q |
28 |
caatgtatggctatgttaagagcaaaatatatgtgttata----------tccatgcaaataacgatagaaaatcgtgatatataagctccagatttgca |
117 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| || |||||||| | |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4852057 |
caatgtatggctaagttaagagtaaaatatatgtgttatacttacttatatcaatgcaaatcatgatagaaaatcgtgatatatgtgctctagatttgca |
4851958 |
T |
|
| Q |
118 |
aat |
120 |
Q |
| |
|
||| |
|
|
| T |
4851957 |
aat |
4851955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 4856028 - 4855926
Alignment:
| Q |
28 |
caatgtatggctatgttaagagcaaaatatatgtgttata----------tccatgcaaataacgatagaaaatcgtgatatataagctccagatttgca |
117 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| || |||||||| | |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4856028 |
caatgtatggctaagttaagagtaaaatatatgtgttatacttacttatatcaatgcaaatcatgatagaaaatcgtgatatatgtgctctagatttgca |
4855929 |
T |
|
| Q |
118 |
aat |
120 |
Q |
| |
|
||| |
|
|
| T |
4855928 |
aat |
4855926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 4877763 - 4877661
Alignment:
| Q |
28 |
caatgtatggctatgttaagagcaaaatatatgtgttata----------tccatgcaaataacgatagaaaatcgtgatatataagctccagatttgca |
117 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||| || |||||||| | |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
4877763 |
caatgtatggctaagttaagagtaaaatatatgtgttatacttacttatatcaatgcaaatcatgatagaaaatcgtgatatatgtgctctagatttgca |
4877664 |
T |
|
| Q |
118 |
aat |
120 |
Q |
| |
|
||| |
|
|
| T |
4877663 |
aat |
4877661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 4845206 - 4845141
Alignment:
| Q |
56 |
atatgtgttatatccatgcaaataacgatagaaaatcgtgatatataagctccagatttgcaaata |
121 |
Q |
| |
|
|||||||||||||| ||| |||| | || ||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
4845206 |
atatgtgttatatcaatgtaaattatgagagaaaatcgtgctatatgtgctctagatttgcaaata |
4845141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 4870902 - 4870837
Alignment:
| Q |
56 |
atatgtgttatatccatgcaaataacgatagaaaatcgtgatatataagctccagatttgcaaata |
121 |
Q |
| |
|
|||||||||||||| ||| |||| | || ||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
4870902 |
atatgtgttatatcaatgtaaattatgagagaaaatcgtgctatatgtgctctagatttgcaaata |
4870837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University