View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_1 (Length: 929)
Name: NF2748_low_1
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_1 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 87 - 911
Target Start/End: Complemental strand, 35812580 - 35811745
Alignment:
| Q |
87 |
aagggatatttcaagtaaaaaattgacttgaaaccaccccattcaataaagaaattggcagagagaacatgagaaaaataagaccggcatattgatttaa |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
35812580 |
aagggatatttcaagtaaaaaattgacttgaaaccaccccattcaataaagaaattggcagagacaacatgagaaaaataagaccggcttattgatttaa |
35812481 |
T |
|
| Q |
187 |
tagtgaaaataaacttgcaattattgatccaattcttttgtatattttgttaccaacgactcaaatacaatactataatgaaaagataatttaaccctct |
286 |
Q |
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|| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35812480 |
tattgaaaataaatttgcaattattcatccaattcttttgtatattttgtaaccaacgactcaaatacaatactataatgaaaagataatttaaccctct |
35812381 |
T |
|
| Q |
287 |
ctttttgataggtaacttgaagaaacaatacaataattaacaaatttaatactacggtaaattttcttaaaaatacataaaacgttattgtttatcctta |
386 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35812380 |
ctttttaataggtaacttgaagaaacaatacaataattaacaaatttaatactacggtaaattttcttaaaaatacataaaacgttattgtttatcctta |
35812281 |
T |
|
| Q |
387 |
ttgtaagaaacatatataaatgtacaacaannnnnnnnncctcttcttttgagacaaaagcaacagagaaagtaaaaacacaatgtgaattttttatata |
486 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||| |
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| T |
35812280 |
ttgtaagaaacatatataaatg-acaac-cgttgtttttcctcttcttttgagacaaaagcaacggagaaag-aaaaattaaatgtg-attttttatata |
35812185 |
T |
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| Q |
487 |
aaatggttatataaatatcatttctcttttggtaaattttattaacatannnnnnnnaaagaatgaaatattgtttttaatctttacttcttcttattat |
586 |
Q |
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|||||||| || ||||||||||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
35812184 |
aaatggttgtacaaatatcatttctcttttgataaattttattaatatatttttttttaaaaatgaaatattgtttttaatctttacttcttcttattat |
35812085 |
T |
|
| Q |
587 |
aaaattcnnnnnnnactaaaagtggtaaaaacccacctttgaataattaccgagagattaaattta----------atactactgtattttgaatgtttt |
676 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
35812084 |
aaaattctttttttactaaaagtggtaaaaacccacctttgaataattaccgagaggttaattttagatacatcatatactactgtattttgaatgtttt |
35811985 |
T |
|
| Q |
677 |
annnnnnnaaacagaatttagagtgaatttctttggtctttataatctaactttttgtttcttataaataggaataaagagagcaatat-----gacgaa |
771 |
Q |
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| T |
35811984 |
atttttttaaacagaatttagagtgaatttctttggtctttataatctaactttttgtttcttataaataggaataaagagagcaatatgataggacgaa |
35811885 |
T |
|
| Q |
772 |
gaataataaaaatgcaatcacaccaatcatcatttttctcaataagcattattgtgatcacttggtaatggtttacataggaccctttccttgattttgt |
871 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35811884 |
gaataataaaaatgcaatcacaccaatcatcatttttctcaataagcattattgtgatcacttggtaatggtttacataggaccctttccttgattttgt |
35811785 |
T |
|
| Q |
872 |
ctaatcatgtgggaaccaattcattcattacttggcaact |
911 |
Q |
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| T |
35811784 |
ctaatcatgtgggaaccaattcattcattacttggcaact |
35811745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 483 - 517
Target Start/End: Complemental strand, 36907077 - 36907043
Alignment:
| Q |
483 |
tataaaatggttatataaatatcatttctcttttg |
517 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
36907077 |
tataaaatggttgtataaatatcatttctcttttg |
36907043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 515
Target Start/End: Original strand, 5115 - 5144
Alignment:
| Q |
486 |
aaaatggttatataaatatcatttctcttt |
515 |
Q |
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| T |
5115 |
aaaatggttatataaatatcatttctcttt |
5144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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