View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_low_101 (Length: 240)

Name: NF2748_low_101
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_low_101
NF2748_low_101
[»] chr4 (7 HSPs)
chr4 (1-240)||(28290387-28290626)
chr4 (4-238)||(28282115-28282348)
chr4 (136-236)||(19251144-19251244)
chr4 (100-236)||(29558345-29558474)
chr4 (173-238)||(28278529-28278594)
chr4 (149-236)||(28303471-28303558)
chr4 (4-55)||(28303139-28303190)


Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28290387 - 28290626
Alignment:
Q  1 gtcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatttataaatttggcgtaattgtttattttagcggaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28290387 gtcgtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatttataaatttggcgtaattgtttattttagcggaatgg 28290486  T
Q  101 gtgacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28290487 gtgacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgtgt 28290586  T
Q  201 tgactgtgaaaagaggtttctttggctgcaagtaagttca 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28290587 tgactgtgaaaagaggtttctttggctgcaagtaagttca 28290626  T

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Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 28282115 - 28282348
Alignment:
Q  4 gtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccattagttgatt-tataaatttggcgtaattgtttattttagcggaatgggt 102  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  28282115 gtgtttctgctgtggggagagtatgctcaggagaaaattcggtactgccattagttgattctataaatttggcgtaattgtttattttagcggaatgggc 28282214  T
Q  103 gacaagcaagttattctgcttacttttggtatgtcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttg 202  Q
    ||||||||||||||||| || ||||| ||  |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| || |         
T  28282215 gacaagcaagttattcttctcactttggg--tgtcttatattcagcttaattgatcaaaccaagcatcatattctgaaagctgaacatccttctggagct 28282312  T
Q  203 actgtgaaaagaggtttctttggctgcaagtaagtt 238  Q
    ||||||||| |||||||||| |||||||||||||||    
T  28282313 actgtgaaaggaggtttcttcggctgcaagtaagtt 28282348  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 136 - 236
Target Start/End: Original strand, 19251144 - 19251244
Alignment:
Q  136 tcttatatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaa 235  Q
    |||||| |||||| ||||||||  |||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  19251144 tcttatgtgcagcataattgatgcaaccaagcatcacattctaaaagctgcacatccctctgagttgactgtgaaaaaaggtttctttggctgcaagtaa 19251243  T
Q  236 g 236  Q
    |    
T  19251244 g 19251244  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 29558474 - 29558345
Alignment:
Q  100 ggtgacaagcaagttattctgcttacttttggtatgtcttatatgcagctt-aattgatcaaaccaagcatcacattctaaaagctgaacatccctccgc 198  Q
    |||||||| ||||||||||||||||||||        ||| ||||||| || ||||||||||||||||||||||||||| |||||||| ||||| ||||     
T  29558474 ggtgacaaacaagttattctgcttacttt--------cttgtatgcagttttaattgatcaaaccaagcatcacattctgaaagctgagcatccttccgt 29558383  T
Q  199 gttgactgtgaaaagaggtttctttggctgcaagtaag 236  Q
    |||||||||||||||||||||||| |||||||||||||    
T  29558382 gttgactgtgaaaagaggtttcttcggctgcaagtaag 29558345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 28278529 - 28278594
Alignment:
Q  173 attctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaagtt 238  Q
    ||||| ||||||| ||||||||||  |||||||||| |||||||||||||| ||||||||||||||    
T  28278529 attctgaaagctgcacatccctccaggttgactgtggaaagaggtttctttagctgcaagtaagtt 28278594  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 28303471 - 28303558
Alignment:
Q  149 ttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgcgttgactgtgaaaagaggtttctttggctgcaagtaag 236  Q
    |||||||||  |||||| ||||||||||||||||||| |||||| ||||  ||| ||| ||| ||||| |||||||| |||| |||||    
T  28303471 ttaattgatgcaaccaaacatcacattctaaaagctgcacatccttccggtttgtctgcgaatagaggcttctttggttgcaggtaag 28303558  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 28303139 - 28303190
Alignment:
Q  4 gtgtttctgatgtggggagagtctgctcaggagaaaattcggtactgccatt 55  Q
    ||||||||| |||||||| ||||||||||||||||| || |||||| |||||    
T  28303139 gtgtttctgctgtggggaaagtctgctcaggagaaacttaggtactaccatt 28303190  T

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