View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_106 (Length: 235)
Name: NF2748_low_106
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 16088637 - 16088434
Alignment:
| Q |
15 |
tgaaacaagagcataagcttgaaacaagagcaaccaacaaagatcattatccaacgtgattggaatgatggatttcacgttggtgattgcaaaagcaggt |
114 |
Q |
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| T |
16088637 |
tgaaacaagagcataagcttgaaacaagagcaaccaacaaagatcattatccaacgtgattggaatgatggatttcacgttggtgattgcaaaagcaggt |
16088538 |
T |
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| Q |
115 |
tggaatttgggttgttgggttgctgcttcagatgttgtggctgccatggctgcagcaggtaagggatagtttgagtggtgcggaagaagttgagtggtgg |
214 |
Q |
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| T |
16088537 |
tggaatttgggttgttgggttgctgcttcagatgttgtggctgccatggctgcagcaggtaagggatagtttgagtggtgcggaagaagttgagtggtgg |
16088438 |
T |
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| Q |
215 |
ctag |
218 |
Q |
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|||| |
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| T |
16088437 |
ctag |
16088434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 218
Target Start/End: Original strand, 7328471 - 7328622
Alignment:
| Q |
64 |
tccaacgtgattggaatgatggatttcacgttggtgattgcaaaagcaggttggaatttgggttgttgggttgctgcttcagatgttgtggctgccatgg |
163 |
Q |
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| T |
7328471 |
tccaacgtgattggaatgatggatttcacgttggtgattccaaaagcagagtggaatttgggttgttgggtttctgtttcagatgttgttgctgccatgg |
7328570 |
T |
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| Q |
164 |
ctgcagcaggtaagggatagtttgagtggtgcggaagaagttgagtggtggctag |
218 |
Q |
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| T |
7328571 |
ct---gcaggtaaaggaaagtttgagtggtgcggaagaattagagtggcggctag |
7328622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 57 - 218
Target Start/End: Complemental strand, 1664442 - 1664281
Alignment:
| Q |
57 |
atcattatccaacgtgattggaatgatggatttcacgttggtgattgcaaaagcaggttggaatttgggttgttgggttgctgcttcagatgttgtggct |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1664442 |
atcattatccaacgtgattggaatgatggatttcacgttggtgattgcaaaagcagtgtggaatttgggttgttgagtcgctgcttcagatgttgtggct |
1664343 |
T |
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| Q |
157 |
gccatggctgcagcaggtaagggatagtttgagtggtgcggaagaagttgagtggtggctag |
218 |
Q |
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| T |
1664342 |
accatggctgcagcaggtaagggatagtttgagtggtgcggaagaatttgagtggtggctag |
1664281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 28556455 - 28556304
Alignment:
| Q |
64 |
tccaacgtgattggaatgatggatttcacgttggtgattgcaaaagcaggttggaatttgggttgttgggttgctgcttcagatgttgtggctgccatgg |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||||| |||||||| | |
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| T |
28556455 |
tccaacgtgattggaatgatggatttcacgttggtgattccaaaagcagagtggaatttgggttgttgggttgctaaatcagccgttgttgctgccatag |
28556356 |
T |
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| Q |
164 |
ctgcagcaggtaagggatagtttgagtggtgcggaagaagttgagtggtggctag |
218 |
Q |
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|| ||||| ||||||||||||||||||||| |||||| |||||||| |||||| |
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| T |
28556355 |
ct---gcagggaagggatagtttgagtggtgcagaagaatttgagtggcggctag |
28556304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 28549274 - 28549124
Alignment:
| Q |
64 |
tccaacgtgattggaatgatggatttcacgttggtgattgcaaaagcaggttggaatttgggttgttgggttgctgcttcagatgttgtggctgccatgg |
163 |
Q |
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| T |
28549274 |
tccaacgtgattgtaatgatggatttcacgttggtgattccaaaagcagagtggaatttgggttgtt-ggttgctaaatcagttgttgttgctgccatac |
28549176 |
T |
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| Q |
164 |
ctgcagcaggtaagggatagtttgagtggtgcggaagaagttgagtggtggctag |
218 |
Q |
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|| ||||||||||||||||||||||| || ||||||| |||||||| |||||| |
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| T |
28549175 |
ct---gcaggtaagggatagtttgagtgatgtggaagaatttgagtggcggctag |
28549124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 36037398 - 36037342
Alignment:
| Q |
162 |
ggctgcagcaggtaagggatagtttgagtggtgcggaagaagttgagtggtggctag |
218 |
Q |
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| T |
36037398 |
ggctgcagcaggtaagggatagtttgagtggtgcggaagaatttgagtggtggctag |
36037342 |
T |
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