View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_11 (Length: 631)
Name: NF2748_low_11
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 166 - 623
Target Start/End: Complemental strand, 4168849 - 4168404
Alignment:
| Q |
166 |
gaacggtagataactatcatttagacttctactttgatttaaaccgatgattcggaaattatttgagcatagatatgttgaaccgtgaatttgtaatttc |
265 |
Q |
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| T |
4168849 |
gaacgatagttaactatcatttagacttctactttgatttaaaccgatgattcggaaattatttgagcatagatatgttgaaccgtgaattagtaatttc |
4168750 |
T |
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| Q |
266 |
gttaaattgatttcccaactagtaannnnnnnnagaaaccaaataaaacttttcatttaagtcaaggcaccaggggtgccaacataaggattaaaggcaa |
365 |
Q |
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| T |
4168749 |
cttaaattgatttcccaactagtaattttttttagaaaccaaataaaacttttcatttaagtcaaggcaccaggggtgccaacataaggattaaaggcaa |
4168650 |
T |
|
| Q |
366 |
aagccttcatagcaccaaatacaaccacccctgcaacaactataaatacaaggtaacttaacaccgcctgatgcacctacaaagttgaagcagaaatgta |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4168649 |
aagccttcatagcaccaaatacaaccacccctgcaacaactataaatacaaggtaacttaacaccgcctgatgcacctacaaagttgaagcagaaatgta |
4168550 |
T |
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| Q |
466 |
aataaatgattgccttacatcagccccaccccactacttaagcaaccacacctactctcagggcaaaaataaacgcagcaaaacatatgtggcatatgaa |
565 |
Q |
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| T |
4168549 |
aataaatgattgccttacatcagccccaccccactacttaagcaaccacacctactc------------taaacgcagcaaaacatatgtggcatatgaa |
4168462 |
T |
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| Q |
566 |
ccagaccttataagcagtccctaactatatataccttatcaacaaacaaacctatgct |
623 |
Q |
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| T |
4168461 |
ccagaccttataaacagtccctaactatatataccttatcaacaaacaaacctatgct |
4168404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 4169027 - 4168864
Alignment:
| Q |
19 |
ttcatgagcaacacttacatgaaagagggatcgcccaaaccatccagcaaatgctaggagacaaagcacacaataaattaaaaataaattgtattgctcc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4169027 |
ttcatgagcaacacttacatgaaagagggatcgcccaaaccatccagcaaatgctaggagacaaagcacacaataaattgaaaataaattgtattgctcc |
4168928 |
T |
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| Q |
119 |
acggtatttagctacccttggagtt-ttttgtttaagttgtatctgtggaacggtagataacta |
181 |
Q |
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| T |
4168927 |
acggtagttagctacccttggagtttttttgtttaagttgcatatgtggaacagtagataacta |
4168864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 38755890 - 38755933
Alignment:
| Q |
28 |
aacacttacatgaaagagggatcgcccaaaccatccagcaaatg |
71 |
Q |
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| T |
38755890 |
aacacttacatgaaagagggatcgcccaaaccatccagcaaatg |
38755933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 623
Target Start/End: Complemental strand, 4179381 - 4179352
Alignment:
| Q |
594 |
atataccttatcaacaaacaaacctatgct |
623 |
Q |
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| T |
4179381 |
atataccttatcaacaaacaaacctatgct |
4179352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 34469720 - 34469760
Alignment:
| Q |
141 |
gttttttgtttaagttgtatctgtggaacggtagataacta |
181 |
Q |
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| T |
34469720 |
gttttttttttaagttgtatttgtggaacggtagttaacta |
34469760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 1192924 - 1192807
Alignment:
| Q |
66 |
caaatgctaggagacaaagcacacaataaatta---aaaataaattgtattgctccacggtatttagctacccttggagttttttgtttaagttgtatct |
162 |
Q |
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||||||||||||||| |||||||| ||||| || ||||| ||| | ||||||| |||| ||| ||||| |||||||||||| |||||||||||| | |
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| T |
1192924 |
caaatgctaggagactaagcacactataaagtatttaaaatctattttcatgctccatggtagttaactaccgttggagtttttt-tttaagttgtatat |
1192826 |
T |
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| Q |
163 |
gtggaacggtagataacta |
181 |
Q |
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||| |||||||| |||||| |
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| T |
1192825 |
gtgaaacggtagttaacta |
1192807 |
T |
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