View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_112 (Length: 219)
Name: NF2748_low_112
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_112 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 18735902 - 18736087
Alignment:
| Q |
17 |
cataggaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacattgaaga |
116 |
Q |
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| T |
18735902 |
cataggaacctaaccatattctctggcggctgtttggcagcctgatttctgacacatatttcccccactttctcttccttactcctctatacaatgaaga |
18736001 |
T |
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| Q |
117 |
atcacttctttccaccgcagttttttccatattcgatttcaccatatttactttttagggtataagaaaataagtacacaaacact |
202 |
Q |
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| T |
18736002 |
atcacttctttccaccgcaattttttccatattcgatttcaccatatttactctttagggtataagaaaataagtacacaaacact |
18736087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 18730568 - 18730748
Alignment:
| Q |
22 |
gaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacattgaagaatcac |
121 |
Q |
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| T |
18730568 |
gaacctaaccatattctttggcggctgtttggtagtctgatttcagacacatactttccccacttcctcttccttactcctctatacattgaagaatcac |
18730667 |
T |
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| Q |
122 |
ttctttccaccgcagttttttccatattcgatttcaccatatttactttttagggtataagaaaataagtacacaaacact |
202 |
Q |
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| T |
18730668 |
ttctttccgcagcagttttttctacatttgatttcaccatatttactctttaggatataagaaaataattacacaaacact |
18730748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 18733338 - 18733481
Alignment:
| Q |
22 |
gaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacattgaagaatcac |
121 |
Q |
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| T |
18733338 |
gaacctaaccatattctttggcggctgtttggtagtctgatttcagacacatactttccccatttcctcttccttactcctctatacaatgaagaatcac |
18733437 |
T |
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| Q |
122 |
ttctttccaccgcagttttttccatattcgatttcaccatattt |
165 |
Q |
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||| |||||||||||||||||||| ||| ||||||||||||||| |
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| T |
18733438 |
ttcgttccaccgcagttttttccacatttgatttcaccatattt |
18733481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 18743356 - 18743505
Alignment:
| Q |
12 |
agaagcataggaacctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacatt |
111 |
Q |
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|||| |||| |||||||||||||||||||| ||||||||||| | || || ||||| ||||||||||||||||| ||||||| |||||| | |||| | |
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| T |
18743356 |
agaatcataagaacctaaccatattctctgacggctgtttggtaatctaatctccgacacatatttcccccacttcctcttccgtactccacggtacaat |
18743455 |
T |
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| Q |
112 |
gaagaatcacttctttccaccgcagttttttccatattcgatttcaccat |
161 |
Q |
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| T |
18743456 |
gatgaatcacttcgttctgtcgtaggtttttccacattcgacttcaccat |
18743505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 505642 - 505675
Alignment:
| Q |
74 |
atttcccccactttctcttccttactcctctata |
107 |
Q |
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| T |
505642 |
atttcccccaatttctcttccttactcctctata |
505675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 3573815 - 3573730
Alignment:
| Q |
25 |
cctaaccatattctctggcggctgtttggcagcctgatttccgaaacatatttcccccactttctcttccttactcctctatacat |
110 |
Q |
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|||||||||||||||| || || ||||| ||||| ||||| || || |||| ||||| ||||||||||| || ||||||||||| |
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| T |
3573815 |
cctaaccatattctctcacgactatttggaagcctaatttcagatacccattttccccattttctcttcctcacccctctatacat |
3573730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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