View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_113 (Length: 218)
Name: NF2748_low_113
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_113 |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 31992173 - 31992314
Alignment:
| Q |
14 |
aatattaattagttttaagataattgtcatattttaatgcaagtgtcattctgatctgcactttattctgataagcaaattgaacaactaaaatctgatc |
113 |
Q |
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| T |
31992173 |
aatattaattagttttaagataattgtcatattttaatgcaagtgtcattctgatctgcactttattctgataagcaaattgaacaactaaaatctgatc |
31992272 |
T |
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| Q |
114 |
gattttcatatcatgatttattcttttatcttatattagttc |
155 |
Q |
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| T |
31992273 |
gattttcatatcatgatttattcttttatcttatattagttc |
31992314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 31992702 - 31992758
Alignment:
| Q |
146 |
atattagttcttttgtcgcggtattgagcggtgctcgtaatttgctgagcaataaat |
202 |
Q |
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| T |
31992702 |
atattagttcttttgtcgcggtattgagtggtgctcgtaatttgctgagcaataaat |
31992758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 20971465 - 20971532
Alignment:
| Q |
86 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
153 |
Q |
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| T |
20971465 |
aagcaaattgaacaactaaaatctgatcaattatcatatcatgatttattattttatcaaatattagt |
20971532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 20974044 - 20974098
Alignment:
| Q |
86 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattctttt |
140 |
Q |
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| T |
20974044 |
aagcaaattgagcaactaaattctgatcgattttcatatcttgatttattctttt |
20974098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 41405063 - 41405130
Alignment:
| Q |
86 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
153 |
Q |
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| T |
41405063 |
aagcaaattgaacaactaaaatcttatcaattttcatatcatgatttattattttatcaaatattagt |
41405130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 7315 - 7382
Alignment:
| Q |
86 |
aagcaaattgaacaactaaaatctgatcgattttcatatcatgatttattcttttatcttatattagt |
153 |
Q |
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| T |
7315 |
aagcaaattgaacaactaaaatcttatcaattttcatatcatgatctattattttatcaaatattagt |
7382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 49067553 - 49067501
Alignment:
| Q |
146 |
atattagttcttttgtcgcggtattgagcggtgctcgtaatttgctgagcaat |
198 |
Q |
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| T |
49067553 |
atatcagttctgttgtcgcggtattgagcggtgctagtagtttgctgagcaat |
49067501 |
T |
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