View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_low_2 (Length: 833)

Name: NF2748_low_2
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_low_2
NF2748_low_2
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-340)||(35481-35825)
[»] chr1 (11 HSPs)
chr1 (122-339)||(52947347-52947565)
chr1 (64-345)||(46652563-46652846)
chr1 (64-333)||(46651367-46651638)
chr1 (274-344)||(36145339-36145409)
chr1 (274-340)||(16673250-16673316)
chr1 (274-340)||(33257880-33257946)
chr1 (274-340)||(33278052-33278118)
chr1 (309-343)||(45915503-45915537)
chr1 (274-339)||(7653686-7653751)
chr1 (274-343)||(7655258-7655327)
chr1 (309-342)||(28649680-28649713)
[»] chr5 (9 HSPs)
chr5 (64-339)||(42775420-42775697)
chr5 (252-340)||(42776789-42776878)
chr5 (309-341)||(30381603-30381635)
chr5 (309-340)||(35988854-35988885)
chr5 (274-340)||(16308564-16308630)
chr5 (309-343)||(31024354-31024388)
chr5 (274-339)||(1418930-1418995)
chr5 (309-342)||(4285157-4285190)
chr5 (274-339)||(30332283-30332348)
[»] chr7 (16 HSPs)
chr7 (265-343)||(28848554-28848632)
chr7 (64-342)||(43546512-43546792)
chr7 (252-340)||(25008091-25008180)
chr7 (265-341)||(43545340-43545417)
chr7 (252-340)||(25009456-25009545)
chr7 (252-340)||(28849939-28850028)
chr7 (274-340)||(31392057-31392123)
chr7 (274-340)||(31393653-31393719)
chr7 (274-343)||(21715068-21715137)
chr7 (309-349)||(3843259-3843299)
chr7 (309-340)||(23966314-23966345)
chr7 (309-340)||(26776309-26776340)
chr7 (274-348)||(45277961-45278036)
chr7 (309-339)||(4706634-4706664)
chr7 (309-339)||(4707497-4707527)
chr7 (309-343)||(21914667-21914701)
[»] scaffold0018 (1 HSPs)
scaffold0018 (64-339)||(193591-193868)
[»] chr4 (16 HSPs)
chr4 (176-340)||(39929249-39929414)
chr4 (265-341)||(39927931-39928008)
chr4 (274-341)||(55947358-55947425)
chr4 (274-340)||(42889804-42889870)
chr4 (274-340)||(44251604-44251670)
chr4 (309-343)||(52477641-52477675)
chr4 (274-342)||(10337101-10337169)
chr4 (309-340)||(15807655-15807686)
chr4 (274-341)||(19994496-19994563)
chr4 (312-342)||(47848238-47848268)
chr4 (309-339)||(47864489-47864519)
chr4 (274-340)||(48713456-48713522)
chr4 (64-196)||(5236379-5236512)
chr4 (15-111)||(13506954-13507051)
chr4 (250-342)||(13508429-13508526)
chr4 (274-343)||(19996048-19996117)
[»] chr3 (9 HSPs)
chr3 (176-340)||(45981406-45981571)
chr3 (265-340)||(8391400-8391476)
chr3 (252-333)||(8392774-8392856)
chr3 (252-343)||(45982770-45982862)
chr3 (309-345)||(3990874-3990910)
chr3 (309-348)||(25165890-25165929)
chr3 (309-340)||(25166775-25166806)
chr3 (309-339)||(20289619-20289649)
chr3 (274-340)||(53529528-53529594)
[»] chr2 (15 HSPs)
chr2 (176-344)||(20587034-20587203)
chr2 (64-339)||(20588241-20588518)
chr2 (274-340)||(28563375-28563441)
chr2 (309-341)||(28917134-28917166)
chr2 (309-347)||(2237973-2238012)
chr2 (309-340)||(2238851-2238882)
chr2 (309-340)||(21716439-21716470)
chr2 (309-340)||(21720227-21720258)
chr2 (309-348)||(24559581-24559620)
chr2 (309-352)||(29090877-29090920)
chr2 (309-351)||(3149907-3149949)
chr2 (274-352)||(6844091-6844169)
chr2 (309-339)||(28916285-28916315)
chr2 (274-343)||(45493026-45493095)
chr2 (274-343)||(45500768-45500837)
[»] scaffold0524 (2 HSPs)
scaffold0524 (64-341)||(8851-9130)
scaffold0524 (274-336)||(7701-7763)
[»] scaffold0472 (2 HSPs)
scaffold0472 (172-350)||(10337-10516)
scaffold0472 (252-340)||(9019-9108)
[»] scaffold0369 (1 HSPs)
scaffold0369 (252-340)||(8241-8330)
[»] chr8 (8 HSPs)
chr8 (64-333)||(35505528-35505799)
chr8 (274-341)||(25264338-25264405)
chr8 (309-348)||(1939441-1939480)
chr8 (274-341)||(3158031-3158098)
chr8 (309-340)||(23154338-23154369)
chr8 (309-339)||(11761038-11761068)
chr8 (309-339)||(23153548-23153578)
chr8 (309-339)||(26635510-26635540)
[»] chr6 (11 HSPs)
chr6 (309-349)||(24051245-24051285)
chr6 (269-340)||(7678636-7678707)
chr6 (274-338)||(2956229-2956293)
chr6 (309-349)||(9699185-9699225)
chr6 (201-348)||(31994675-31994823)
chr6 (309-340)||(6159753-6159784)
chr6 (309-340)||(28302193-28302224)
chr6 (309-340)||(28509849-28509880)
chr6 (274-340)||(1258434-1258500)
chr6 (309-339)||(29979254-29979284)
chr6 (309-338)||(24052024-24052053)
[»] scaffold0141 (1 HSPs)
scaffold0141 (309-343)||(10302-10336)
[»] scaffold0765 (1 HSPs)
scaffold0765 (309-339)||(386-416)


Alignment Details
Target: scaffold0140 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 35825 - 35481
Alignment:
Q  1 taaacagagggaaaaagaagatgaaaactacaatttttaaattaaaaatttgatatttaagacttttt-aatttcatccctttgcactctttcgtttttc 99  Q
    |||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  35825 taaacagaaggatgaagaagatgaaaactacagtttttaaattaaaaatttgatatttatgacttttttaatttcatccctttgcactttttcgtttttc 35726  T
Q  100 gttttggtccctgaatctagccactccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctag 199  Q
     || | |||||| |||||||||||| |||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |    
T  35725 tttgtagtccctcaatctagccactacccagctcttttgacacgtaaccctccttttgccaagtcaccgtaagccacgtgtgtctccgtctgccacctcg 35626  T
Q  200 ccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaag-cttacaaggagagttttgaaacaaaaaa---gatacaaggacgaatt 295  Q
    || ||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||| |||||||||    
T  35625 ccgtttttgtaacgggagttaacgggaatgaccatttgcaaaacgaaaaaagacttacaaggagagttttgaaacaaaaaaaagaatacagggacgaatt 35526  T
Q  296 gcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  35525 gcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 35481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 3e-72; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 122 - 339
Target Start/End: Complemental strand, 52947565 - 52947347
Alignment:
Q  122 actccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaa 221  Q
    |||| ||||||||||||||||||||| ||||||||| || |||||| |||||||||| |||||||| ||||||||| ||| ||||||||| |||||||||    
T  52947565 actcaccaactcttttgacacgtaaccctccttttgtcaagtcacactaagccacgtatgtctccgcctgccacctcgccgtttttgtaacgggagttaa 52947466  T
Q  222 tgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa-aaaagatacaaggacgaattgcaaaaatacgtgaaattacaggga 320  Q
     |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||  ||||||||| ||    
T  52947465 cgggaagaatcatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaaaaaaagatacatggacgaattgcaaaaatgcgcaaaattacagaga 52947366  T
Q  321 cggtttgcatatttaagcc 339  Q
    |||||||||||||||||||    
T  52947365 cggtttgcatatttaagcc 52947347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 64 - 345
Target Start/End: Original strand, 46652563 - 46652846
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  46652563 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaac 46652662  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  46652663 tcacacttcgccgcgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 46652762  T
Q  263 agttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaata 345  Q
      ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||    
T  46652763 gattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaaata 46652846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 64 - 333
Target Start/End: Complemental strand, 46651638 - 46651367
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||     |||||||||      
T  46651638 tttttaatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaac 46651539  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   ||||||||||||||||||||||||    | ||||||||| ||||||||| |||| |||  | ||||||| |||     | ||||||||||    
T  46651538 tcacacttcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggatgaattgcaaa-cgattggcaacttacaagga 46651440  T
Q  262 gagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatt 333  Q
       ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||||||||||    
T  46651439 tgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatatt 46651367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 36145409 - 36145339
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaat 344  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| |||||||||||||||||    
T  36145409 aaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcctaaat 36145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 16673250 - 16673316
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  16673250 aaaaaagatacagggacgaaaaccaaaaacacgcaaaattacagggacgatttacatatttaagcct 16673316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 33257946 - 33257880
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||| ||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  33257946 aaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 33257880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 33278118 - 33278052
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||| ||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  33278118 aaaaaagatacaaggacaaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 33278052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 45915537 - 45915503
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaa 343  Q
    ||||||||||||||| |||||||||||||||||||    
T  45915537 aaattacagggacggattgcatatttaagcctaaa 45915503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 7653751 - 7653686
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| ||||||||||||    
T  7653751 aaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcc 7653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 7655258 - 7655327
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||| |||||||   |||||| |||  |||||||||| ||| ||| ||||||||||||||||    
T  7655258 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggaacgatttacatatttaagcctaaa 7655327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 28649713 - 28649680
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaa 342  Q
    ||||||||||||||| ||||||||||||||||||    
T  28649713 aaattacagggacggattgcatatttaagcctaa 28649680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 64 - 339
Target Start/End: Complemental strand, 42775697 - 42775420
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  42775697 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaac 42775598  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  42775597 tcacacttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 42775498  T
Q  263 agttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 339  Q
      ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||| ||| ||| ||||||||||||    
T  42775497 gattttgaaacaaaaaaagatacaaggacgatttgcaaaaacacgcgaaattacaggaacgttttacatatttaagcc 42775420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 42776789 - 42776878
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  42776789 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacggtttgcatattaaagcct 42776878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 30381603 - 30381635
Alignment:
Q  309 aaattacagggacggtttgcatatttaagccta 341  Q
    |||||||||||||||||||||||||||||||||    
T  30381603 aaattacagggacggtttgcatatttaagccta 30381635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 35988885 - 35988854
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  35988885 aaattacagggacggtttgcatatttaagcct 35988854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 16308630 - 16308564
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||| ||| |||||||||||||    
T  16308630 aaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagcct 16308564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 31024354 - 31024388
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||||||||||||||||||| ||||||    
T  31024354 aaattacagggacggtttgcatatttaatcctaaa 31024388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 1418930 - 1418995
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||| |||||||    ||||| |||| |||||||||||||| ||| ||||||||||||    
T  1418930 aaaaaagatacagggacgaaaacaaaaaacacgtcaaattacagggacgatttacatatttaagcc 1418995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 4285190 - 4285157
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaa 342  Q
    ||||||||||||| ||||||||||||||||||||    
T  4285190 aaattacagggacagtttgcatatttaagcctaa 4285157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 30332348 - 30332283
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| ||||||||||||    
T  30332348 aaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcc 30332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 28848632 - 28848554
Alignment:
Q  265 ttttgaaacaaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 343  Q
    ||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||| ||| ||||||||||||||||    
T  28848632 ttttgaaacaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaaa 28848554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 64 - 342
Target Start/End: Original strand, 43546512 - 43546792
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  43546512 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaaacttttgccaac 43546611  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||      ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  43546612 tcacacttcgccgcgtgtgtctccgtctgccaccacaatgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 43546711  T
Q  263 agttttgaaacaaaaaaga-tacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 342  Q
      |||| |||||||||| | |||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||||||    
T  43546712 gattttaaaacaaaaaaaaatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaa 43546792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 25008180 - 25008091
Alignment:
Q  252 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||   ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||||    
T  25008180 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 25008091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 43545417 - 43545340
Alignment:
Q  265 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 341  Q
    ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  43545417 ttttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagccta 43545340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 25009456 - 25009545
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||| ||||||    
T  25009456 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatattaaagcct 25009545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 28849939 - 28850028
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||| ||||||||||| |||||||||| ||||||    
T  28849939 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaagttacagggacgttttgcatattaaagcct 28850028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 31392123 - 31392057
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||||||||||| |||||||   |||||| |||| |||||||||||||| ||| |||||||||||||    
T  31392123 aaaaaagatacagggacgaaaaccaaaaacacgtcaaattacagggacgatttacatatttaagcct 31392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 31393653 - 31393719
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  31393653 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 31393719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 21715137 - 21715068
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| ||||||||||||||||    
T  21715137 aaaaaagatacagggacgaaaatcaaaaacacgccaaattacagggacgatttacatatttaagcctaaa 21715068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 3843259 - 3843299
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaat 349  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  3843259 aaattacagagacggtttgcatatttaagccaaaataaaat 3843299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 23966345 - 23966314
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  23966345 aaattacagggacggtttgcatatttaagcct 23966314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 26776340 - 26776309
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  26776340 aaattacagggacggtttgcatatttaagcct 26776309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 348
Target Start/End: Original strand, 45277961 - 45278036
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc-taaataaaa 348  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||| |||||||||    
T  45277961 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccataaataaaa 45278036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 4706664 - 4706634
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  4706664 aaattacagggacggtttgcatatttaagcc 4706634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 4707497 - 4707527
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  4707497 aaattacagggacggtttgcatatttaagcc 4707527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 343
Target Start/End: Original strand, 21914667 - 21914701
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||||||||||||||| ||||||||||    
T  21914667 aaattacagggacggtttgcatatgtaagcctaaa 21914701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 64 - 339
Target Start/End: Complemental strand, 193868 - 193591
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || | || ||||||| |||     |||||||||      
T  193868 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatcgctcttgacacataagcaagcttttgccaac 193769  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  193768 tcacacttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctattaacttacaaggat 193669  T
Q  263 agttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 339  Q
      ||||||||||||||| |||||| |||||| ||||||||| ||| |||||||||| |||| ||| ||||||||||||    
T  193668 gattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagagacgttttacatatttaagcc 193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 176 - 340
Target Start/End: Original strand, 39929249 - 39929414
Alignment:
Q  176 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 275  Q
    |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  39929249 cgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 39929348  T
Q  276 aa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    || |||||||| |||||| ||||||||| ||| ||||||||| ||||| ||| |||||||||||||    
T  39929349 aaaaagatacagggacgatttgcaaaaacacgcgaaattacatggacgttttacatatttaagcct 39929414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 39928008 - 39927931
Alignment:
Q  265 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 341  Q
    ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  39928008 ttttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagccta 39927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 55947425 - 55947358
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 341  Q
    |||||||||||| |||||||   ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  55947425 aaaaaagatacagggacgaaaaccaaaaatacgtcaaattacagggacgatttacatatttaagccta 55947358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 42889804 - 42889870
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||    ||||| ||||||| ||||||||||| ||| |||||||||||||    
T  42889804 aaaaaagatacaaggacgaaaacaaaaaacacgtgaacttacagggacgatttacatatttaagcct 42889870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 44251670 - 44251604
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  44251670 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 44251604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 52477675 - 52477641
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||||||||||||||||||||||||||    
T  52477675 aaattacagggacggtttgcatatttaagcctaaa 52477641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 10337169 - 10337101
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 342  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||| ||||    
T  10337169 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagtctaa 10337101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 15807686 - 15807655
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  15807686 aaattacagggacggtttgcatatttaagcct 15807655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 19994563 - 19994496
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 341  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| ||||||||||||||    
T  19994563 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccta 19994496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 342
Target Start/End: Complemental strand, 47848268 - 47848238
Alignment:
Q  312 ttacagggacggtttgcatatttaagcctaa 342  Q
    |||||||||||||||||||||||||||||||    
T  47848268 ttacagggacggtttgcatatttaagcctaa 47848238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 47864519 - 47864489
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  47864519 aaattacagggacggtttgcatatttaagcc 47864489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 48713456 - 48713522
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  48713456 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 48713522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 5236512 - 5236379
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccct-gaatctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    |||||||||||||||||||||| | || ||||||| || |||||||||    |||||||||||  || |||| ||||||| |||  || |||||||||      
T  5236512 tttttaatttcatccctttgcaattttgcgtttttggtcttggtccctcctttctagccactcatcatctctcttgacacataattctgcttttgccaac 5236413  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacc 196  Q
    ||||  |  ||||||||||||||| ||| |||||    
T  5236412 tcaccattcgccacgtgtgtctccatctaccacc 5236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 13507051 - 13506954
Alignment:
Q  15 aagaagatgaaaactacaatttttaaattaaaaattt-gatatttaagactttttaatttcatccctttgcactctttcgtttttcgttttggtccct 111  Q
    ||||||||||||| ||   ||||||||||  |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||||||  |||||||||||    
T  13507051 aagaagatgaaaaataatgtttttaaatttcaaattttgatgtttacgagtttttaatttcatccctatgcacttttgtgtttttgtttttggtccct 13506954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 342
Target Start/End: Original strand, 13508429 - 13508526
Alignment:
Q  250 agcttacaaggagagttttgaaacaaaa-----aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaa 342  Q
    |||||||||||| |||||||||| ||||     ||||||||  ||||| ||||||||| |||  |||||| || |||  |||||||||||||||||||    
T  13508429 agcttacaaggacagttttgaaaaaaaaaaaaaaagatacacagacgatttgcaaaaacacgcaaaattatagagacattttgcatatttaagcctaa 13508526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 19996048 - 19996117
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||| |||| ||   |||||| |||  |||||||||||||| ||| ||||||||||||||||    
T  19996048 aaaaaagatacagggaccaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcctaaa 19996117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 176 - 340
Target Start/End: Complemental strand, 45981571 - 45981406
Alignment:
Q  176 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 275  Q
    ||||||||||||||||| |||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  45981571 cgtgtgtctccgtctgcaaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 45981472  T
Q  276 aaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||| ||||||||||||| ||||||||| ||| ||||||||| ||||| ||| |||||||||||||    
T  45981471 aaaaagatacaaggacgatttgcaaaaacacgcgaaattacaaggacgttttacatatttaagcct 45981406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 8391476 - 8391400
Alignment:
Q  265 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||||    
T  8391476 ttttgaaacaaaaaaagatacaaggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 8391400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 8392774 - 8392856
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatt 333  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||    
T  8392774 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacggtttgcatatt 8392856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 45982770 - 45982862
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 343  Q
    ||||||||||   ||||||||||||| |||||||| ||| || ||||||||| | | ||||||||||||||| |||||||||| |||||||||    
T  45982770 cttacaaggatgattttgaaacaaaaaaagatacagggatgatttgcaaaaacatgcgaaattacagggacgatttgcatattaaagcctaaa 45982862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 3990874 - 3990910
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaata 345  Q
    |||||||||||||||||||||||||||| ||||||||    
T  3990874 aaattacagggacggtttgcatatttaaacctaaata 3990910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 25165929 - 25165890
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaa 348  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  25165929 aaattacagggacggtttgcatatttaagccgaaagaaaa 25165890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 25166775 - 25166806
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  25166775 aaattacagggacggtttgcatatttaagcct 25166806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 20289619 - 20289649
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  20289619 aaattacagggacggtttgcatatttaagcc 20289649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 53529528 - 53529594
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| |||||||||||||    
T  53529528 aaaaaagatacagggacgaaaactaaaaatacgccaaattacagggacgatttacatatttaagcct 53529594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 176 - 344
Target Start/End: Complemental strand, 20587203 - 20587034
Alignment:
Q  176 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 275  Q
    |||||||||||||||||||||    | ||||||||| |||||||||  ||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  20587203 cgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacaggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 20587104  T
Q  276 aaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaat 344  Q
    |||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||||| ||||    
T  20587103 aaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagccaaaat 20587034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 339
Target Start/End: Original strand, 20588241 - 20588518
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||     |||||||||      
T  20588241 tttttaatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaac 20588340  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   |||||||||||| |||||||||||    | ||||||||| ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  20588341 tcacacttcaccacgtgtgtctacgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 20588439  T
Q  262 gagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcc 339  Q
       ||||||||||||| ||||||||  ||||| ||||||||| ||| ||||||||||||||| ||| ||||||||||||    
T  20588440 tgattttgaaacaaaaaaagatacagagacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcc 20588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 28563441 - 28563375
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  28563441 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 28563375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 28917134 - 28917166
Alignment:
Q  309 aaattacagggacggtttgcatatttaagccta 341  Q
    |||||||||||||||||||||||||||||||||    
T  28917134 aaattacagggacggtttgcatatttaagccta 28917166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 2238012 - 2237973
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc-taaataaa 347  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  2238012 aaattacagggacggtttgcatatttaagccataaataaa 2237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 2238851 - 2238882
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  2238851 aaattacagggacggtttgcatatttaagcct 2238882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 21716470 - 21716439
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  21716470 aaattacagggacggtttgcatatttaagcct 21716439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 21720227 - 21720258
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  21720227 aaattacagggacggtttgcatatttaagcct 21720258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 348
Target Start/End: Original strand, 24559581 - 24559620
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaa 348  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  24559581 aaattacagggacggtttgcatatttaagccaaaaaaaaa 24559620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 29090920 - 29090877
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaataaa 352  Q
    |||||||||||||||||||||||||||||| ||||  |||||||    
T  29090920 aaattacagggacggtttgcatatttaagcgtaaaataaataaa 29090877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 351
Target Start/End: Complemental strand, 3149949 - 3149907
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaataa 351  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  3149949 aaattacaaggacggtttgcatatttaagcctttataaaataa 3149907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 6844091 - 6844169
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaataaaataaa 352  Q
    |||||||||||||||| |||   |||||| ||| ||| ||||| ||||  ||| |||||||||||||| ||||||||||    
T  6844091 aaaaaagatacaaggatgaaaaccaaaaacacgcgaacttacaaggaccttttacatatttaagcctagataaaataaa 6844169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 28916315 - 28916285
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  28916315 aaattacagggacggtttgcatatttaagcc 28916285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 45493026 - 45493095
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||  ||| ||||||||||||||||    
T  45493026 aaaaaagatacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaagcctaaa 45493095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 45500768 - 45500837
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||  ||| ||||||||||||||||    
T  45500768 aaaaaagatacagggacgaaaaccaaaaacacgcgaatttacagggaccttttacatatttaagcctaaa 45500837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 64 - 341
Target Start/End: Original strand, 8851 - 9130
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||||   |||||||||      
T  8851 tttttaatttcatccctctgcaattttgcggttttggttttggtccctcctttctagccactcatcatctctcttgacacataacaaagcttttgccaac 8950  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   |||||||||||||||||| |||||    | ||||||||| ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  8951 tcacacttcaccacgtgtgtctccgtctaccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 9049  T
Q  262 gagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 341  Q
       || |||||||||| |||||||| |||||| ||||||||| |||  |||||||||||||| |||||||||| |||||||    
T  9050 tgattctgaaacaaaaaaagatacagggacgatttgcaaaaacacgcaaaattacagggacgttttgcatattaaagccta 9130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 7763 - 7701
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaa 336  Q
    |||||||||||| |||||| ||||||||| ||| ||||||||||||||| ||| |||||||||    
T  7763 aaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaa 7701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 172 - 350
Target Start/End: Original strand, 10337 - 10516
Alignment:
Q  172 gccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaa 271  Q
    |||||||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | |||| |||||   |||||||    
T  10337 gccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttataaggatgattttgaa 10436  T
Q  272 acaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcctaaataaaata 350  Q
    |||||| |||||||| |||||| ||||||||| ||| ||||||| || || | ||| |||||||||||||||||| ||||    
T  10437 acaaaaaaagatacagggacgatttgcaaaaacacgcgaaattatagagatgttttacatatttaagcctaaatataata 10516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 9108 - 9019
Alignment:
Q  252 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||   ||||||||||||||| ||||||||||||| ||||||||  ||| ||||||||||| ||| |||||||||| ||||||    
T  9108 cttacaaggatgattttgaaacaaaaaaagatacaaggacgatttgcaaaatcacgcgaaattacaggaacgttttgcatattaaagcct 9019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 8241 - 8330
Alignment:
Q  252 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||   ||||||||||||||| |||| | |||||| ||||||||| ||| ||||||||||||||| |||||||||| ||||||    
T  8241 cttacaaggatgattttgaaacaaaaaaagatatagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattcaagcct 8330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 333
Target Start/End: Complemental strand, 35505799 - 35505528
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    |||||||||||||||||||||| | || || |||| ||||| ||| ||   | ||||||||||  || ||||||||| || ||| |   |||||||||      
T  35505799 tttttaatttcatccctttgcaattttgcgcttttggtttttgtctctcctttctagccactcatcatctcttttgaaacataagaaagcttttgccaac 35505700  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   |||||| |||||||||||||||||    ||||||||||  ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  35505699 tcacacttcaccacgtctgtctccgtctgccaccacaacatttttgtagcgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 35505601  T
Q  262 gagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatt 333  Q
       ||||||||||||||| |||||| |||||| || |||||| ||| ||||||||||||||| ||||||||||    
T  35505600 tgattttgaaacaaaaaaagatacatggacgatttacaaaaacacgcgaaattacagggacgttttgcatatt 35505528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 25264405 - 25264338
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 341  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| ||||||||||||||    
T  25264405 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccta 25264338  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 1939480 - 1939441
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaa 348  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  1939480 aaattacagggacagtttgcatatttaagcctaaaaaaaa 1939441  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 341
Target Start/End: Original strand, 3158031 - 3158098
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagccta 341  Q
    |||||||||||| |||||||   |||||| ||| ||| ||||||||||| ||| ||||||||||||||    
T  3158031 aaaaaagatacagggacgaaaaccaaaaacacgcgaacttacagggacgatttacatatttaagccta 3158098  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 23154338 - 23154369
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  23154338 aaattacagggacggtttgcatatttaagcct 23154369  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 11761068 - 11761038
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  11761068 aaattacagggacggtttgcatatttaagcc 11761038  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 23153578 - 23153548
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  23153578 aaattacagggacggtttgcatatttaagcc 23153548  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Complemental strand, 26635540 - 26635510
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  26635540 aaattacagggacggtttgcatatttaagcc 26635510  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 24051285 - 24051245
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaat 349  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  24051285 aaattacagggacggtttgcatatttaagcctaaaaaaaat 24051245  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 7678636 - 7678707
Alignment:
Q  269 gaaacaaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||| ||||||||||||||||| ||  ||||||| |||  |||||||||||||| ||| |||||||||||||    
T  7678636 gaaaaaaaaaagatacaaggacaaaaagcaaaaacacgccaaattacagggacgatttacatatttaagcct 7678707  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 2956229 - 2956293
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagc 338  Q
    ||||||||||||||||||||   |||||| || | |||||||||||||| ||| |||||||||||    
T  2956229 aaaaaagatacaaggacgaaaaccaaaaacacatcaaattacagggacgatttacatatttaagc 2956293  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 9699185 - 9699225
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaataaaat 349  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  9699185 aaattacagggacggtttgcatatttaaacctaaattaaat 9699225  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 31994823 - 31994675
Alignment:
Q  201 catttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaa-acaaaaaagatacaaggacgaattgcaa 299  Q
    ||||||||||| ||| ||||| |||| |||| | |||||||  |  || | |||| |||||  |||||||| | |||||||||||| |||  ||||||||    
T  31994823 catttttgtaacgggtgttaacgggagggactaattgcaaatggttaacaacttataaggatggttttgaagaaaaaaaagatacagggaaaaattgcaa 31994724  T
Q  300 aaatacgtgaaattacagggacggtttgcatatttaagcctaaataaaa 348  Q
    ||| ||| ||| ||||| | ||| |||||||||||||||| || |||||    
T  31994723 aaacacgcgaacttacatgaacgttttgcatatttaagccaaattaaaa 31994675  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 6159784 - 6159753
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  6159784 aaattacagggacggtttgcatatttaagcct 6159753  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Original strand, 28302193 - 28302224
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  28302193 aaattacagggacggtttgcatatttaagcct 28302224  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 28509880 - 28509849
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcct 340  Q
    ||||||||||||||||||||||||||||||||    
T  28509880 aaattacagggacggtttgcatatttaagcct 28509849  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 1258434 - 1258500
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcatatttaagcct 340  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| |||||||||||||    
T  1258434 aaaaaagatacagggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 1258500  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 29979254 - 29979284
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  29979254 aaattacagggacggtttgcatatttaagcc 29979284  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 24052024 - 24052053
Alignment:
Q  309 aaattacagggacggtttgcatatttaagc 338  Q
    ||||||||||||||||||||||||||||||    
T  24052024 aaattacagggacggtttgcatatttaagc 24052053  T

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Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 10336 - 10302
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcctaaa 343  Q
    |||||||||||||||||||||||||||||||||||    
T  10336 aaattacagggacggtttgcatatttaagcctaaa 10302  T

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Target: scaffold0765 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 309 - 339
Target Start/End: Original strand, 386 - 416
Alignment:
Q  309 aaattacagggacggtttgcatatttaagcc 339  Q
    |||||||||||||||||||||||||||||||    
T  386 aaattacagggacggtttgcatatttaagcc 416  T

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