View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_20 (Length: 531)
Name: NF2748_low_20
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 185 - 514
Target Start/End: Complemental strand, 31753595 - 31753264
Alignment:
| Q |
185 |
tatattttcacttaagactttgaatcattatgattcaagtatatgagttacttctattgatctcttatgtatattcaacaatgaattcatttacaaaata |
284 |
Q |
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| T |
31753595 |
tatattttcacttaagactttgaatcattatgattcaagtatatgagttacttctattgatctcttatgtatattcaacaatgaattcatttacaaaata |
31753496 |
T |
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| Q |
285 |
tatttctatgttgaaaaactcaacatgaaaatatatannnnnnnn--aagtaaaatatgtgcttagctaaaaggattgatcaagagacatagatggaagg |
382 |
Q |
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| T |
31753495 |
tatttccatgttgaaaaactcaacatgaaaatatatattttttttttaagtaaaatatgtgcttagctaaaaggattgatcaagagacatagatggaagg |
31753396 |
T |
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| Q |
383 |
aataaaaaacataattccatgtttttgtgtaaaagggtctctgacaagatgctcaatgtattgttgaaagctttgaagaataaatgaatttgtattgctt |
482 |
Q |
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| T |
31753395 |
aataaaaaacataattccatgtttttgtgtaaaagggtctctgacaagatgctcaatgtattgttgaaagctttgaagaataaatgaatttgtattgctt |
31753296 |
T |
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| Q |
483 |
gcattcaaacaatcgaatatatgtacaatttt |
514 |
Q |
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| T |
31753295 |
gcattcaaacaatcgaatatatgtacaatttt |
31753264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 31753751 - 31753591
Alignment:
| Q |
1 |
tatatgttcttgcagagatagaaagaaccacccacttcaccccccgtgcacttgctggacccacccaccatttaagtgaccatagctcgtttgtaatcca |
100 |
Q |
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| T |
31753751 |
tatatgttcttgcagagatagaaagaaccacccacttcaccccccgtgcacttgctggacccacccaccatttaagtgaccatagctcgtttgtaatcca |
31753652 |
T |
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| Q |
101 |
tcataatagagtttaatggacatgcgttgcgagtcaggagcaactacgaatcaatgatatat |
162 |
Q |
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| T |
31753651 |
tcataatagagtttaatggacatgcattgcgagt-agaagcaactacgaaccaatggtatat |
31753591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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