View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_low_21 (Length: 523)

Name: NF2748_low_21
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_low_21
NF2748_low_21
[»] chr7 (11 HSPs)
chr7 (169-506)||(8546236-8546576)
chr7 (20-134)||(8546611-8546725)
chr7 (42-134)||(8538740-8538832)
chr7 (36-106)||(8602698-8602768)
chr7 (35-102)||(7876901-7876968)
chr7 (20-104)||(8582629-8582713)
chr7 (35-119)||(8647653-8647736)
chr7 (35-102)||(8635566-8635633)
chr7 (20-117)||(8568791-8568888)
chr7 (35-106)||(8591362-8591433)
chr7 (47-102)||(8639789-8639844)
[»] chr8 (1 HSPs)
chr8 (42-104)||(12529834-12529896)
[»] chr5 (1 HSPs)
chr5 (435-495)||(43537560-43537620)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 169 - 506
Target Start/End: Complemental strand, 8546576 - 8546236
Alignment:
Q  169 gtgtgttgttctttactttcattagtacaacatattatagatcaccattttagggcttgtttactttctaaaaacatat--ttggtattcattttaaatt 266  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8546576 gtgtgttgttctttactttaattagtacaacatattatagatcaccattttagggcttgtttactttctaaaaacatatatttggtattcattttaaatt 8546477  T
Q  267 gctaacatgggtttgatatactcatatagttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaacta 366  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546476 gctaacatgggtttgatatactcata--gttaataattgtgctagataaaagatagaaggcaaactagaaaaaatgttttttcagaaaccataacaacta 8546379  T
Q  367 tgttttaccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagaga---acaagtgaaatattgaatctatgctctcatgtgttt 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  8546378 tgttttaccattttcaaaacttccaaaaatgtcaaatatgttacaaaaattgtagaagagaatgacaagtgaaatattgaatctatgctctcatgtgttt 8546279  T
Q  464 attagttgatatgaaaatgaaaataggaagtaaatgtgccctt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8546278 attagttgatatgaaaatgaaaataggaagtaaatgtgccctt 8546236  T

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Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 8546725 - 8546611
Alignment:
Q  20 gctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatttacttattcttttgt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8546725 gctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcaggcttcttctaacccaatcaacactgtatttggtaatttacttattcttttgt 8546626  T
Q  120 tgcagcactgtttaa 134  Q
    | |||||||||||||    
T  8546625 tccagcactgtttaa 8546611  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 8538832 - 8538740
Alignment:
Q  42 tgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatttacttattcttttgttgcagcactgtttaa 134  Q
    ||||||||||||||||||||||||  ||||| ||||||||||  |||||||| |||||||||| | ||||||||||||| |||||||||||||    
T  8538832 tgattggtgatgctgccaaaaatcaagcttcctctaacccaacaaacactgtctttggtaattcatttattcttttgttccagcactgtttaa 8538740  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Complemental strand, 8602768 - 8602698
Alignment:
Q  36 aaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaattta 106  Q
    ||||| |||| ||||||||||||||||||| |||| ||||||||||| |||||||| | ||||||||||||    
T  8602768 aaaggttgatcggtgatgctgccaaaaatcaggctgcttctaacccagtcaacactatctttggtaattta 8602698  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 7876901 - 7876968
Alignment:
Q  35 caaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaa 102  Q
    |||||| |||||||||||||||||||||||| |||| | |||||||||  ||||||||| ||||||||    
T  7876901 caaaggttgattggtgatgctgccaaaaatcaggctgcctctaacccatccaacactgtctttggtaa 7876968  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 8582713 - 8582629
Alignment:
Q  20 gctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatt 104  Q
    ||||| || ||||| |||||  ||||||||||||||||||||||||  ||| |||||||||||| ||||||| | | ||||||||    
T  8582713 gcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaacccaaccaacactatctatggtaatt 8582629  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 8647736 - 8647653
Alignment:
Q  35 caaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatttacttattcttttgt 119  Q
    |||||| ||||||||||||| || ||||||| |||| |||||||||| | ||||||||| |||||||| || | |||||||||||    
T  8647736 caaaggttgattggtgatgccgctaaaaatcaggctgcttctaaccctaccaacactgtctttggtaaatttc-tattcttttgt 8647653  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 8635566 - 8635633
Alignment:
Q  35 caaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaa 102  Q
    |||||| |||||||||||||||||||||| | |||||| |||||||||  ||| ||||| ||||||||    
T  8635566 caaaggttgattggtgatgctgccaaaaaccaggcttcctctaacccatccaatactgtctttggtaa 8635633  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 8568888 - 8568791
Alignment:
Q  20 gctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatttacttattctttt 117  Q
    |||||||| || || |||||  ||||||||||||||||||||||||  ||| ||||||| |||| |||||||   |||||||||| | || |||||||    
T  8568888 gctttcactaaatctcaaagattgattggtgatgctgccaaaaatcaagctgcttctaatccaaccaacactacctttggtaattcattttttctttt 8568791  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 8591433 - 8591362
Alignment:
Q  35 caaaggctgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaattta 106  Q
    |||||| |||||||||||||||| ||||| | |||| |||||||||||   |||||||| || |||||||||    
T  8591433 caaaggttgattggtgatgctgcaaaaaaccaggctgcttctaacccagcaaacactgtcttcggtaattta 8591362  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 8639789 - 8639844
Alignment:
Q  47 ggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaa 102  Q
    ||||||||||| || |||| ||||||||||||||| | ||||||||| ||||||||    
T  8639789 ggtgatgctgctaagaatcaggcttcttctaaccctaccaacactgtctttggtaa 8639844  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 12529896 - 12529834
Alignment:
Q  42 tgattggtgatgctgccaaaaatcgggcttcttctaacccaatcaacactgtatttggtaatt 104  Q
    |||||||| |||||||||||||||  ||||| |||||||| | ||||||| | ||||||||||    
T  12529896 tgattggtcatgctgccaaaaatcaagcttcctctaaccccaccaacactatctttggtaatt 12529834  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 495
Target Start/End: Complemental strand, 43537620 - 43537560
Alignment:
Q  435 aaatattgaatctatgctctcatgtgtttattagttgatatgaaaatgaaaataggaagta 495  Q
    ||||||| |||||||  |||| | ||||||||||||||  |||||||||||| ||||||||    
T  43537620 aaatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaacaggaagta 43537560  T

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