View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_24 (Length: 481)
Name: NF2748_low_24
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 301 - 468
Target Start/End: Complemental strand, 9660410 - 9660237
Alignment:
| Q |
301 |
tatcaattttattaatatgattacttgaacaatggcagaccaaatgtctcagttacaagca-------agacagaatttatggttcctttttctctagtg |
393 |
Q |
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| T |
9660410 |
tatcaattttgttaatatgattacttgaacaatggaagaccaaatgtctcagttacaagtacaatctaagacaaaatttatggttccttgttct-tagtg |
9660312 |
T |
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| Q |
394 |
gatgttttcctaaaataacaaagcacaatttgtaagcaataactggtaatcaaaagctgatgtagtagtttatga |
468 |
Q |
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| T |
9660311 |
gatgttttcctaaaataacaaagcacaatttgtgagcaataactggtaaccaaaagctgatgtagtagtttatga |
9660237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 9660755 - 9660506
Alignment:
| Q |
32 |
aagcacacgagaaaaatggtattacttgtgaaattggctatgctttgaggaattctcatgtgagtacatagtgtttgtaaatacaacaaattaaaagttg |
131 |
Q |
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| T |
9660755 |
aagcacacaagaaaaatggtagtacttgtgaaattggctatgctttgagcaattctcatatgagtgcatagtgtttgtagat---acaagttaaaagtag |
9660659 |
T |
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| Q |
132 |
aacatagacttcagatatnnnnnnnnnnnnnnnntttagtggtaaaattcatacataataaatg--tggagaaacgaagaattgtgagttagaaatttac |
229 |
Q |
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| T |
9660658 |
aacatagacttcagtta---aacaatttaaaaagtttagtagtaaaattcacacataataaatgctaaaaaaaatgaggaat--tgagttagaaatttac |
9660564 |
T |
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| Q |
230 |
tctaacctatcaaatatttttactatctttttaccatttgaattgtgattatgaaacaa |
288 |
Q |
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| T |
9660563 |
tctaacctatcaaatatttttac-atctttttatcatttgaattgtgattatgaaacaa |
9660506 |
T |
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