View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_27 (Length: 469)
Name: NF2748_low_27
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Complemental strand, 51238271 - 51237845
Alignment:
| Q |
20 |
tgaaacatccatgaagtatcaatggaatccataaatacaaactcctttccaaaatctccaacgtttcccaaacgaggaagctcaattatctcactcaatt |
119 |
Q |
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| T |
51238271 |
tgaaacatccatgaagtatcaatggaatccataaatacaaactcctttccaaaatctccaacgtttcccaaacgaggaagctcaattatctcactcaatt |
51238172 |
T |
|
| Q |
120 |
catatgaagttgttgaagacggaaactccatgtgagctgctttagtagcggctgcttgaacatcgcggggagcaagtgaagccggtcgaggaagcaagtt |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51238171 |
catatgaagttgttgaagatggaaactccatgtgagctgctttattagctgctgcttgaacatctcggggagcaagtgaagccggtcgaggaagcaagtt |
51238072 |
T |
|
| Q |
220 |
tgctaactcagggaagttgagaatggcggcacttccttttatactgagagcagctacatcgtgtgctcgagcagccatttctggtgtgggaaatgtgccg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
51238071 |
tgctaactcagggaagttgagaatggcggcacttccttttatactgagagcagctacatcgtgtgctcgagctgccatttccggtgtgggaaatgtgccg |
51237972 |
T |
|
| Q |
320 |
agccatattcgggattttttcttaggctcacgaatttcggacacccattttccccaatttcgcattcggacaccacgatataccggatgcttgcttgtgt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51237971 |
agccatattcgggattttttcttaggctcacgaatttcggacacccattttccccaatttcgcattcggacaccacgatataccggatgcttgcttgtgt |
51237872 |
T |
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| Q |
420 |
ctcttatgccttttatttgttgggatt |
446 |
Q |
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| T |
51237871 |
ctcttatgccttttatttgttgggatt |
51237845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 380
Target Start/End: Original strand, 505544 - 505656
Alignment:
| Q |
268 |
agcagctacatcgtgtgctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccat |
367 |
Q |
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|||||||||||| ||||||| ||| |||||||| | ||| || |||| || |||||||||| ||||||||||| ||||||||||| || |||| || |
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| T |
505544 |
agcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgattttttctttggctcacgaatctcacacacaaat |
505643 |
T |
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| Q |
368 |
tttccccaatttc |
380 |
Q |
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|| |||||||||| |
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| T |
505644 |
ttcccccaatttc |
505656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 381
Target Start/End: Complemental strand, 4268757 - 4268648
Alignment:
| Q |
272 |
gctacatcgtgtgctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccattttc |
371 |
Q |
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|||||||||||||||| ||| |||||||||||||| | ||||| || ||||| |||| |||||||| || || || ||||| || |||||||||| |
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| T |
4268757 |
gctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcagatacccattttc |
4268658 |
T |
|
| Q |
372 |
cccaatttcg |
381 |
Q |
| |
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|||| ||||| |
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| T |
4268657 |
cccagtttcg |
4268648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 3996397 - 3996512
Alignment:
| Q |
284 |
gctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccattttccccaatttcgca |
383 |
Q |
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|||||||| ||||| || ||||| ||| | ||||| ||||| |||| ||||||||||| ||||| | |||||| || ||||||||||||||| | |||| |
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| T |
3996397 |
gctcgagctgccatctcgggtgttggataagtgcctagccaaattcttgattttttcttgggctctctaatttctgaaacccattttccccaactacgca |
3996496 |
T |
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| Q |
384 |
ttcggacaccacgata |
399 |
Q |
| |
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||| || |||||||| |
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| T |
3996497 |
ttcttactccacgata |
3996512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 375
Target Start/End: Original strand, 16357819 - 16357926
Alignment:
| Q |
268 |
agcagctacatcgtgtgctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattt-tttcttaggctcacgaatttcggacaccca |
366 |
Q |
| |
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|||||||||||| || |||| ||| |||||||| | ||| || |||| || |||||||||| || || |||||| |||||||||||||| || ||||| |
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| T |
16357819 |
agcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattcttgacttctttctt-ggctcacgaatttcagataccca |
16357917 |
T |
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| Q |
367 |
ttttcccca |
375 |
Q |
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||||||||| |
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| T |
16357918 |
ttttcccca |
16357926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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