View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_31 (Length: 447)
Name: NF2748_low_31
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 428
Target Start/End: Complemental strand, 24231790 - 24231379
Alignment:
| Q |
17 |
ttacatttgatggcttcacagttactgcccctgcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaacaccaa |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24231790 |
ttacatttgatggcttcacagttactgccccttcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaacaccaa |
24231691 |
T |
|
| Q |
117 |
catcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgttgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24231690 |
tatcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaagtgtggacctggtcatggtattagtgttgga |
24231591 |
T |
|
| Q |
217 |
agccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaacctcaactcaaaatggtgtgaggattaagacttggc |
316 |
Q |
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| T |
24231590 |
agccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaaccgcaactcaaaatggtgtgaggattaagacttggc |
24231491 |
T |
|
| Q |
317 |
ctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtattgtcc |
416 |
Q |
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| T |
24231490 |
ctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcacgaaccctatcatcattgaccaagagtattgtcc |
24231391 |
T |
|
| Q |
417 |
atggaacgcgtg |
428 |
Q |
| |
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| T |
24231390 |
atggaacgcgtg |
24231379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 24243488 - 24243073
Alignment:
| Q |
13 |
aatattacatttgatggcttcacagttactgcccctgcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaaca |
112 |
Q |
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||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
24243488 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacactgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
24243389 |
T |
|
| Q |
113 |
ccaacatcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgt |
212 |
Q |
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| T |
24243388 |
ctaacatcggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtat |
24243289 |
T |
|
| Q |
213 |
tggaagccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaacctcaactcaaaatggtgtgaggattaagact |
312 |
Q |
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| T |
24243288 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagcaactgacaatggtgtgaggatcaagact |
24243189 |
T |
|
| Q |
313 |
tggcctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtatt |
412 |
Q |
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| T |
24243188 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctgtcatcatagaccaagagtatt |
24243089 |
T |
|
| Q |
413 |
gtccatggaacgcgtg |
428 |
Q |
| |
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|||||||||||||||| |
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| T |
24243088 |
gtccatggaacgcgtg |
24243073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 428
Target Start/End: Original strand, 24298710 - 24299125
Alignment:
| Q |
13 |
aatattacatttgatggcttcacagttactgcccctgcagacagtcccaacacagatggaatccacatgggaagatcaactgatgttaaaattcttaaca |
112 |
Q |
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||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
24298710 |
aatattacatttgatagcttcacaattactgcccctggagacagtcccaacactgatggaatccacatgggaaaatcaactggtgttaaaattcttaaca |
24298809 |
T |
|
| Q |
113 |
ccaacatcggtaccggagatgattgtgtctcattgggagatggtagcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgt |
212 |
Q |
| |
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| |||||||||||||||||||| ||||||||| | || |||||||| | | ||||||||||| |||||||||| |||||||||||||||||| ||||| | |
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| T |
24298810 |
ctaacatcggtaccggagatgactgtgtctcaattggtgatggtagtaaacaaatcactgtcgaaggtgtgaagtgtggacctggtcatggtcttagtat |
24298909 |
T |
|
| Q |
213 |
tggaagccttggaaggtatacgaccgaagataatgtagaaggagttacagttaagaactgtactctaacctcaactcaaaatggtgtgaggattaagact |
312 |
Q |
| |
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|||||||||||||| || |||||| ||||| |||||||| || ||||| |||||||||||||||| || |||| | |||||||||||||| |||||| |
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| T |
24298910 |
tggaagccttggaaagtttacgactgaagaaaatgtagaggggattacaattaagaactgtactctgacagcaaccgacaatggtgtgaggatcaagact |
24299009 |
T |
|
| Q |
313 |
tggcctgatgcaccaggaacaattactgtttctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtatt |
412 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||| |
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| T |
24299010 |
tggcctgatgcaccgggaacaattactgtttctgatatacattttgaagatattaccatgacgaatgtcaagaaccctgtcatcatagaccaagagtatt |
24299109 |
T |
|
| Q |
413 |
gtccatggaacgcgtg |
428 |
Q |
| |
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|||||||||||||||| |
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| T |
24299110 |
gtccatggaacgcgtg |
24299125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 42844204 - 42844365
Alignment:
| Q |
61 |
aacacagatggaatccacatgggaagatcaactgatgtt---aaaattcttaacaccaacatcggtaccggagatgattgtgtctcattgggagatggta |
157 |
Q |
| |
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||||| |||||||| ||||| |||||||||||||||| | ||| |||| ||||| ||||| ||| |||||||||||| ||||||||||| | || | |
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| T |
42844204 |
aacactgatggaatacacattggaagatcaactgatgatgtgaaagttctcaacacaaacatttctactggagatgattgtatctcattgggacaaggaa |
42844303 |
T |
|
| Q |
158 |
gcagaaaaatcactgtccaaggtgtgaaatgtggacctggtcatggtattagtgttggaagc |
219 |
Q |
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||||| |||| || |||||| |||||| ||||||||||||||||| |||||||| |||||| |
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| T |
42844304 |
gcagacaaataacagtccaaaatgtgaattgtggacctggtcatggaattagtgtcggaagc |
42844365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Original strand, 42844490 - 42844568
Alignment:
| Q |
344 |
ctgatatacattttgaagatattaccatgaataatgtcatgaaccctatcatcattgaccaagagtattgtccatggaa |
422 |
Q |
| |
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||||||| ||||||||||||| || |||| ||||||| | ||||| | ||||||||||||||||||||||| ||||| |
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| T |
42844490 |
ctgatatgcattttgaagatactatcatggttaatgtcctaaacccagtgatcattgaccaagagtattgtccttggaa |
42844568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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