View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_32 (Length: 446)
Name: NF2748_low_32
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 21010818 - 21010383
Alignment:
| Q |
1 |
caaaccgtgatgtacacaacaatggagctagaacaaacaagagtaacagtacaagaagaactaagaaaaagagatgaacaactacacaacctaaaagaac |
100 |
Q |
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| T |
21010818 |
caaaccttgatgtacacaacaatggagctagaacaaacaagagtaacagtacaagaagaactaagaaaaagagatgaacaactacataacctaaaagaac |
21010719 |
T |
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| Q |
101 |
ttttcaacaaagttataagagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaaaagcaacaaaacca |
200 |
Q |
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| T |
21010718 |
ttttcaacaaagttataagagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaaaagcaacaaaacca |
21010619 |
T |
|
| Q |
201 |
agatcctttgtctggaatctcaagcattgaagatgaacaaatacaaaagagaggaattgaatcttccaacaatggaatatcactatcagattgtgaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21010618 |
agatcctttgtctggaatctcaagcattgaagatgaacaaatacaaaagagaggaattgaatcttccaacaatggaatatcactatcagattgtgaagaa |
21010519 |
T |
|
| Q |
301 |
agcatagtttcctccccacaacaaacaagaacagaacaaccaatgatgatgatgattgattcaatagcaaaagataaacctttgcctgaaaaaggtaaac |
400 |
Q |
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| T |
21010518 |
agcatagtatcctccccacaacaaacaagaacagaacaaccaatgatgatgatgattgattcaatagcaaaagataaacctttgcctgaaaaaggtaaac |
21010419 |
T |
|
| Q |
401 |
ttttacaagcagtgatgaaagctggtcctttgcttc |
436 |
Q |
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| T |
21010418 |
ttttacaagcagtgatgaaagctggtcctttgcttc |
21010383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 23323913 - 23323858
Alignment:
| Q |
381 |
tttgcctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcctttgcttc |
436 |
Q |
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| T |
23323913 |
tttgcctcaaaagggtaaacttttacaagctgtgattgatgctggtcctttgcttc |
23323858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 35449727 - 35449888
Alignment:
| Q |
25 |
gagctagaacaaacaagagtaacagtacaagaagaactaagaaaaagagatgaacaactacacaacctaaaagaacttttcaacaaagttataagagaaa |
124 |
Q |
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| T |
35449727 |
gagcttgaacaaacaagagtaacagcacaagaagaactcacaaaaaaagatgaacaactaatgaaccttaaagatctaatcaacaacatcattagagaaa |
35449826 |
T |
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| Q |
125 |
gagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
186 |
Q |
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| T |
35449827 |
gagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaa |
35449888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 429
Target Start/End: Original strand, 35450063 - 35450107
Alignment:
| Q |
385 |
cctgaaaaaggtaaacttttacaagcagtgatgaaagctggtcct |
429 |
Q |
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| T |
35450063 |
cctgaaaaaggtaaacttttgcaggcagtgatgaaagctggtcct |
35450107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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