View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_33 (Length: 444)
Name: NF2748_low_33
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 428
Target Start/End: Complemental strand, 51490302 - 51489887
Alignment:
| Q |
13 |
gtacaatcagcataagtacatgctttgctcatactttgtgcaaaattaggatccattacatttgcttgagttgaaataacacaccattgttttgccaaat |
112 |
Q |
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| T |
51490302 |
gtacaatcagcataagtacatgctttgctcatactttgtgcaaaattaggatccattacatttgcttgagttgaaataacacaccattgttttgccaaat |
51490203 |
T |
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| Q |
113 |
atttaactccttttgcaccaacaagtgattttccaccaccaagattcaaagggtatttcatagatccatcaaaattgaaaattccccaatgtctctcaaa |
212 |
Q |
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| T |
51490202 |
atttaactccttttgcaccaacaagtgattttccaccaccaagattcaaagggtatttcatagatccatcaaaattgaaaattccccaatgtctctcaaa |
51490103 |
T |
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| Q |
213 |
tgggccaggatcaatactttttaaatcctcatctaaaagggcaaacatgtaaatttcaggtggggtaggtcttttaggtgttccttgctttttcactatt |
312 |
Q |
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| T |
51490102 |
tgggccaggatcaatactttttaaatcctcatctaaaagggcaaacatgtaaatttcaggtggggtaggtcttttaggtgttccttgctttttcactatt |
51490003 |
T |
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| Q |
313 |
ctatcaacaagtccttgattaaatctttgagcactttttatattagcatttgatgttccatcagttggccaaccaacttcaccaatgataacattcattg |
412 |
Q |
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| T |
51490002 |
ctatcaacaagtccttgattaaatctttgagcactttttatattagcatttgatgttccatcagttggccaaccaacttcaccaatgataacattcattg |
51489903 |
T |
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| Q |
413 |
aaccaaaaccattctt |
428 |
Q |
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| T |
51489902 |
aaccaaaaccattctt |
51489887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 46353651 - 46353595
Alignment:
| Q |
177 |
tccatcaaaattgaaaattccccaatgtctctcaaatgggccaggatcaatactttt |
233 |
Q |
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| T |
46353651 |
tccatcaaactcaaaaattccccaatgtctctcaaagttgccaggagcaatactttt |
46353595 |
T |
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