View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_35 (Length: 443)
Name: NF2748_low_35
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_35 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 12465148 - 12465562
Alignment:
| Q |
1 |
aattagaaaaataaa-tgaaatattgttgggacatacagtnnnnnnnnngtctaagatttaattatgtagttgatccaatttgttgggatgggatataca |
99 |
Q |
| |
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||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
12465148 |
aattataaaaataaaatgaaatattgttgagacatacagtaaaaaaaa-gtctaagatttaattatgtagctgatacaatttgttgggatgggatatacg |
12465246 |
T |
|
| Q |
100 |
gtnnnnnnnnttagaaaaataagaaattgtatatatata--------actggccactcaccaatgaggttaatcgtgcattctgtgtattttgagcagga |
191 |
Q |
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|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
12465247 |
gtaaaaaaaattagaaaaataagaaattgtatatatatatatatattactggtcactcaccaatgaggttaatcgtgcattctg---------agcagga |
12465337 |
T |
|
| Q |
192 |
tagagtatgtcttgaccaccataatatatggatgaactgaggttacatggtccaattatttgatcttggaagatggaactagtaaccttaactttgttgg |
291 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12465338 |
taaagtatgtcttggccaccataatatatggatgaactgaggttacatggtccaattatctgatcttggaagatggaactagtaaccttaactttgttgg |
12465437 |
T |
|
| Q |
292 |
tatgagattgattttcatggatctttgaaatgtcatctatatttataaggaaaacaaattaaaatagaaaaggcattatatatctgaagtaatttcttgt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12465438 |
tatgagattgattttcatggatctttgaaatgtcatctatatatataaggaaaacaaattaaaatagaaaaggcattatatatctgaagtaatttcttgt |
12465537 |
T |
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| Q |
392 |
tttaaaatagaacaaaatatctagt |
416 |
Q |
| |
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| T |
12465538 |
tttaaaatagaacaaaatatctagt |
12465562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 49 - 389
Target Start/End: Original strand, 12483930 - 12484269
Alignment:
| Q |
49 |
gtctaagatttaattatgtagttgatccaatttgttgggatgggatatacagtnnnnnnnnt-tagaaaaataagaaattgtatatatataactggccac |
147 |
Q |
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| T |
12483930 |
gtctaagatttaattatgtagttgatacaatttgttgggatgggatatacagtaaaaaaaaagtagaaaaataagaaattgtatatatt--actggccac |
12484027 |
T |
|
| Q |
148 |
tcaccaatgaggttaatcgtgcattctgtgtattttgagcaggatagagtatgtcttgaccaccataatatatggatgaactgaggttacatggtccaat |
247 |
Q |
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| T |
12484028 |
tcaccaataaggttaatcgtgcaatctttgtactctgagcaggatacaatatgtcttggccaccataatatatggatgaactaaggttacagggtccagt |
12484127 |
T |
|
| Q |
248 |
tatttgatcttggaagatggaactagtaaccttaactttgttggtatgagattgattttcatggatctttgaaatgtcatctatatttataaggaaaaca |
347 |
Q |
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||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |
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| T |
12484128 |
tatctgatcttggaagatggaactagcaatcttaacttttttggtatgagattgattttcaagagtctttgaaatgtcatctgtatttataaggaaaaca |
12484227 |
T |
|
| Q |
348 |
aattaaaatagaaaaggcattatatatctgaagtaatttctt |
389 |
Q |
| |
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||||||||| ||||||| |||||||| |||||||||||||| |
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| T |
12484228 |
aattaaaatcgaaaaggtgttatatatgtgaagtaatttctt |
12484269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 6206473 - 6206386
Alignment:
| Q |
169 |
cattctgtgtattttgagcaggatagagtatgtcttgaccaccataatatatggatgaactgaggttacatggtccaattatttgatc |
256 |
Q |
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| T |
6206473 |
cattctgtgaactctgagcaggataaattatgtcttggccaccataaaatattgatgagctgagattacatggtccaattctttgatc |
6206386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 12468155 - 12468189
Alignment:
| Q |
382 |
aatttcttgttttaaaatagaacaaaatatctagt |
416 |
Q |
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| T |
12468155 |
aatttcttgttttaaaatagaacaaaatatctagt |
12468189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 49 - 389
Target Start/End: Complemental strand, 36547 - 36208
Alignment:
| Q |
49 |
gtctaagatttaattatgtagttgatccaatttgttgggatgggatatacagtnnnnnnnnt-tagaaaaataagaaattgtatatatataactggccac |
147 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
36547 |
gtctaagatttaattatgtagttgatacaatttgttgggatgggatatacagtaaaaaaaaagtagaaaaataagaaattgtatatatt--actggccac |
36450 |
T |
|
| Q |
148 |
tcaccaatgaggttaatcgtgcattctgtgtattttgagcaggatagagtatgtcttgaccaccataatatatggatgaactgaggttacatggtccaat |
247 |
Q |
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| T |
36449 |
tcaccaataaggttaatcgtgcaatctttgtactctgagcaggatacaatatgtcttggccaccataatatatggatgaactaaggttacagggtccagt |
36350 |
T |
|
| Q |
248 |
tatttgatcttggaagatggaactagtaaccttaactttgttggtatgagattgattttcatggatctttgaaatgtcatctatatttataaggaaaaca |
347 |
Q |
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||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |
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| T |
36349 |
tatctgatcttggaagatggaactagcaatcttaacttttttggtatgagattgattttcaagagtctttgaaatgtcatctgtatttataaggaaaaca |
36250 |
T |
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| Q |
348 |
aattaaaatagaaaaggcattatatatctgaagtaatttctt |
389 |
Q |
| |
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||||||||| ||||||| |||||||| |||||||||||||| |
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|
| T |
36249 |
aattaaaatcgaaaaggtgttatatatgtgaagtaatttctt |
36208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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