View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2748_low_42 (Length: 390)
Name: NF2748_low_42
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 7495098 - 7494760
Alignment:
| Q |
38 |
caaactcaagctaacattgttctaattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaa |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
7495098 |
caaactcaagctaacattcttctaattttaacatgaactgttcgacaataaatcaacaacaatgaattatagaatcctgtataaaaatgaaacattttaa |
7494999 |
T |
|
| Q |
138 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcag |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
7494998 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatgaccggtacctccatttccggcaacctttttctggcggctttgttcag |
7494899 |
T |
|
| Q |
238 |
tcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacatgagccttcgttggctgtgattgtcagaaaaattctccccg |
337 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7494898 |
tcccttgcaacttagatccattcgtttttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcagaaaaattctccctg |
7494799 |
T |
|
| Q |
338 |
gaatctcgccggcgacacatttggaattcaccattttct |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7494798 |
gaatctcgccggcgacacatttggaattcaccattttct |
7494760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 37373707 - 37373369
Alignment:
| Q |
38 |
caaactcaagctaacattgttctaattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaa |
137 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
37373707 |
caaactcaagctaacattcttctaattttaacatgaactgttcgacaataaatcaacaataatgaattatagaatcctgtataaaaatgaaacattttaa |
37373608 |
T |
|
| Q |
138 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcag |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37373607 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatgaccggtacctccatttccggcgacctttttctggcggctttgttcag |
37373508 |
T |
|
| Q |
238 |
tcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacatgagccttcgttggctgtgattgtcagaaaaattctccccg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37373507 |
tcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcagaaaaattctccccg |
37373408 |
T |
|
| Q |
338 |
gaatctcgccggcgacacatttggaattcaccattttct |
376 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
37373407 |
gaatctcgtcggtgacacatttgaaattcaccattttct |
37373369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 26487686 - 26487348
Alignment:
| Q |
38 |
caaactcaagctaacattgttctaattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaa |
137 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
26487686 |
caaactcaagctaacattcttctaattttagcatgaactgttcgacaataaatcaacaacgatgaattatagaatcctgtataaaaatgaaacattttaa |
26487587 |
T |
|
| Q |
138 |
ctaagagtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcag |
237 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
26487586 |
ctaagagtggatttttcaatgactaatcagcacaagaatgtttaccatccatggccggtacctccatttccagcgacctttttctggcggctttgttcag |
26487487 |
T |
|
| Q |
238 |
tcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacatgagccttcgttggctgtgattgtcagaaaaattctccccg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26487486 |
tcccttgcaacttagatccattcgattttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcagaaaaattctctccg |
26487387 |
T |
|
| Q |
338 |
gaatctcgccggcgacacatttggaattcaccattttct |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26487386 |
aaatctcgccggcgacacatttggaattcaccattttct |
26487348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 60 - 376
Target Start/End: Original strand, 38618446 - 38618755
Alignment:
| Q |
60 |
taattttagcatgaactattcgacaataaatcaacaacaatgaattatagaatcctgtataaaaataaaatattttaactaagagtggattttccaatga |
159 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
38618446 |
taattttagcatgaaccgttcgacaataaatcaacaacaatgaattatagaatcc-------aaatgaaacattttaactaagagtggattttccaatga |
38618538 |
T |
|
| Q |
160 |
ctaattagcacaagaatgtttaccatccatggccggtacctccattttcggcgacctttttctggcggctttgttcagtcccttgcaacttagatccatt |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38618539 |
ctaattagcacaagaatgtttaccatccatggccggtacctccatttccggcgacctttttctggtggctttgttcagtcccttgcaacttagatccatt |
38618638 |
T |
|
| Q |
260 |
cgattttcttgtagaactaaccgcggaggtgaccacatgagccttcgttggctgtgattgtcagaaaaattctccccggaatctcgccggcgacacattt |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38618639 |
cgattttcttgtagaactaaccgcggaggtgaccacaggagccttcgttggctgtgattgtcggaaaaattctccccggaatctcgccggcgacacattt |
38618738 |
T |
|
| Q |
360 |
ggaattcaccattttct |
376 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38618739 |
ggaattcaccattttct |
38618755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 35843853 - 35843960
Alignment:
| Q |
143 |
agtggattttccaatgactaattagcacaagaatgtttaccatccatggccggtacctccattttc-ggcgacctttttctggcggctttgttcagtccc |
241 |
Q |
| |
|
||||||||||||| |||| |||||||| ||| |||||| ||||||||||| | ||| ||||| |||||||||| || ||| || |||||| ||||| |
|
|
| T |
35843853 |
agtggattttccagcgactcattagcacgagaccttttaccgtccatggccggcatctctgttttccggcgacctttctccggcagcgttgttctgtccc |
35843952 |
T |
|
| Q |
242 |
ttgcaact |
249 |
Q |
| |
|
|||||||| |
|
|
| T |
35843953 |
ttgcaact |
35843960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University