View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_43 (Length: 390)
Name: NF2748_low_43
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_43 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: scaffold0071 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 5866 - 6239
Alignment:
| Q |
1 |
tgttatgacatacccagtcgatggagattataagatgtttgcttacacaaattattgtgtttgcttactggtaatgtgtaagtgtaggatgactgcttaa |
100 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
5866 |
tgttatgacatacacagccgatggagattataagatgtttgcttacacaaattattgtgtttacttactagtaatgtgtaagtgtaggatgactgtttaa |
5965 |
T |
|
| Q |
101 |
cttcaaatgttattttggcattagtgtagcagaactactgagcaatcattgatgtctattgtgtaagatagaaacaccttggaaatctaatttaccaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
5966 |
cttcaaatgttattttggcattagtgtagcagaactgctgagcaatcattgatgtctattgtgtaacatagaaacaccttggaaatctaattgaccaact |
6065 |
T |
|
| Q |
201 |
tatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattcagcaccgtaaatgtgatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
6066 |
tatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattgagcaccgtaaatgttatc |
6165 |
T |
|
| Q |
301 |
tttcattaaaagcactacaaaactgcagacaatgtatatgaaatggttgattttatcgagcgaaccgtacatgt |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6166 |
tttcattaaaagcactacaaaactgcagacaatgtatatgaaatggttgattttattgagcgaaccgtacatgt |
6239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 15456325 - 15455952
Alignment:
| Q |
1 |
tgttatgacatacccagtcgatggagattataagatgtttgcttacacaaattattgtgtttgcttactggtaatgtgtaagtgtaggatgactgcttaa |
100 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |
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| T |
15456325 |
tgttatgacatacacagccgatggagattataagatgtttgcttacacaaattattgtgtttacttactagtaatgtgtaagtgtaggatgactgtttaa |
15456226 |
T |
|
| Q |
101 |
cttcaaatgttattttggcattagtgtagcagaactactgagcaatcattgatgtctattgtgtaagatagaaacaccttggaaatctaatttaccaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
15456225 |
cttcaaatgttattttggcattagtgtagcagaactgctgagcaatcattgatgtctattgtgtaacatagaaacaccttggaaatctaattgaccaact |
15456126 |
T |
|
| Q |
201 |
tatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattcagcaccgtaaatgtgatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
15456125 |
tatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgtattgagcaccgtaaatgttatc |
15456026 |
T |
|
| Q |
301 |
tttcattaaaagcactacaaaactgcagacaatgtatatgaaatggttgattttatcgagcgaaccgtacatgt |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
15456025 |
tttcattaaaagcactacaaaactgcagacaatgtatatgaaatggttgattttattgagcgaaccgtacatgt |
15455952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 8160036 - 8159921
Alignment:
| Q |
179 |
ttggaaatctaatttaccaacttatgagttccttgccataactcacattgtggtacgcagtgcattaattcctttaactcacaactgataaaatgcatgt |
278 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||| | ||||||| || | ||||||| | ||||| |
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| T |
8160036 |
ttggaaatctaattgaccaacttatgagttccttgccataattcaccttgtggtacgcatagcattaatgcttttaactaaccaatgataaatttcatgt |
8159937 |
T |
|
| Q |
279 |
attcagcaccgtaaat |
294 |
Q |
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||| |||||||||||| |
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| T |
8159936 |
attgagcaccgtaaat |
8159921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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