View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_48 (Length: 378)
Name: NF2748_low_48
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 4321858 - 4322222
Alignment:
| Q |
1 |
gatacaattaaggataattaagcaacatcatagttgataaggatgtttatttaaacacctttggaattgttcattacataagagttagctttgttaattg |
100 |
Q |
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| T |
4321858 |
gatacaattaaggataattaagcaacatcatagttgataaggatgtttatttaaacacctttggaattgttcattacataagagttagctttgttaattg |
4321957 |
T |
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| Q |
101 |
tcacaatcaattaaccaatttcagaaatttaaataatacagtgaactgaaaatccatttcttagttgtttcannnnnnngctgcaacttagcattgactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4321958 |
tcacaatcaattaaccaatttcagaaatttaaataatacagtgaactgaaaatccatttcttagttgtttcatttttttgctgcaacttagcattgactc |
4322057 |
T |
|
| Q |
201 |
ctccctcaactgtgtctgtgtgtgtgacattctgctttacctcttttgtctgtcaaacatgaacaatgagataaagttgatgatggaaagtctcaaattg |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4322058 |
ctccctcaactgtgtctgtgtgt-tgacattctgctttacctcttttgtctgtcaaacatgaacaatgagataaagttgatgatggaaagtctcaaattg |
4322156 |
T |
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| Q |
301 |
atgtagtctatcactattaccacctttataagggaaaaataatggtccttaaatgtcaatcatgat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4322157 |
atgtagtctatcactattaccacctttataagggaaaaataatggtccttaaatgtcaatcatgat |
4322222 |
T |
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