View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_5 (Length: 734)
Name: NF2748_low_5
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 675; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 15 - 725
Target Start/End: Complemental strand, 40483903 - 40483193
Alignment:
| Q |
15 |
cagaaactagcacaggtattaggtcagctgtagagtacctcctttaaattttgtttgctcagcaaaggctttggcctgtattaaatataggtattagcta |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483903 |
cagaaactagcacaggtattaggtcagctgtagagtacctcctttaaattttgtttgctcagcaaaggctttggcctgtattaaatataggtattagcta |
40483804 |
T |
|
| Q |
115 |
cgaaaattccagcattctaagatgttaggagaatgtagaaaattccgcgtacctgatcaatgttgccaggtccaatcaatacaagtgctacaccagatgc |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483803 |
cgaaaattccagcattctaagatgttaggagaatgcagaaaattccgcgtacctgatcaatgttgccaggtccaatcaatacaagtgctacaccagatgc |
40483704 |
T |
|
| Q |
215 |
gtccattatatcctgttggtagagcaaaatcaaaacaagagaacgtaaagtgcagcttacaacataaggaagcaaaacaaatagtaaacaaaaagggaca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40483703 |
gtccattatatcctgttggtagagcaaaatcaaaacaagagaacgtaaagtgcagcttacaacataaggaagcaaaacaaatactaaacaaaaagggaca |
40483604 |
T |
|
| Q |
315 |
aaaaccatgagtcatgtttggtcccacattttgaatagagatgcatatcttgttgatactataaactcttaacaaccagaattccagaaccaaaatcgtc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
40483603 |
aaaaccatgagtcatgtttggtcccacattttgaatagagatgcatatcttgttgatactataaactcttaacaagcagaattccagaatcaaaatcgtc |
40483504 |
T |
|
| Q |
415 |
tcctaagaagactttaagtactgaaagcaacgttcaaatgtttttccaagaaaaacagcaatcttaatatgaggttgaagctagcaagaatcaaatgaaa |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
40483503 |
tcctaagaagactttaagtactgaaagcaacgttcaaatgtttttccaagaaaaacagcaatcttaatatgagttagaagctagcaagaatcaaatgaaa |
40483404 |
T |
|
| Q |
515 |
tttcagaagacagtataagaagagcagaaaacattaccttcttggatacaagataatcagctcttttgcggcaaagcacacacctgcaacatatgcaatt |
614 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483403 |
tttcagaagacagtataagaagagcagaaaacaataccttcttggatgcaagataatcagctcttttgcggcaaagcacacacctgcaacatatgcaatt |
40483304 |
T |
|
| Q |
615 |
gttaatttgttacacaactcaatttcaggagctaagtgcatgtttggattgatagtgaattttgtcaaatcacggtgacaccatgatttcattgaagctt |
714 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40483303 |
gttagtttgttacacaactcaatttcaggagctaagtgcatgtttggattgatagtgaattttgtcaaatcacggtgacaccatgatttcattgaagctt |
40483204 |
T |
|
| Q |
715 |
caaagtataat |
725 |
Q |
| |
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||||||||||| |
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| T |
40483203 |
caaagtataat |
40483193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 213
Target Start/End: Complemental strand, 17647852 - 17647738
Alignment:
| Q |
97 |
aaatataggtattagctacgaaaattccagcattctaagatgttaggagaatgtagaaaattccgcgtacctgatcaatgttgccaggtccaatcaatac |
196 |
Q |
| |
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|||||||||| ||||||| |||||| |||| |||||||| ||||||||||| || |||| | || | || |||||||||| ||| ||||||||||||| |
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| T |
17647852 |
aaatataggtggtagctac-aaaattttagcaatctaagatattaggagaatgaagcaaatccagcat-ccagatcaatgtttccaagtccaatcaatac |
17647755 |
T |
|
| Q |
197 |
aagtgctacaccagatg |
213 |
Q |
| |
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|||||| |||| ||||| |
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| T |
17647754 |
aagtgccacactagatg |
17647738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 674 - 707
Target Start/End: Complemental strand, 22533761 - 22533728
Alignment:
| Q |
674 |
ttttgtcaaatcacggtgacaccatgatttcatt |
707 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |
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| T |
22533761 |
ttttgtcaaatcacggtgagaccatgatttcatt |
22533728 |
T |
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