View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_low_60 (Length: 315)

Name: NF2748_low_60
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_low_60
NF2748_low_60
[»] chr1 (7 HSPs)
chr1 (125-298)||(45202962-45203135)
chr1 (198-285)||(45209348-45209435)
chr1 (198-285)||(45245511-45245598)
chr1 (198-285)||(45228152-45228239)
chr1 (3-58)||(45203426-45203481)
chr1 (3-58)||(45203597-45203652)
chr1 (63-127)||(45203297-45203361)
[»] chr6 (3 HSPs)
chr6 (203-285)||(19274436-19274518)
chr6 (203-285)||(19291053-19291135)
chr6 (89-127)||(31791421-31791459)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 125 - 298
Target Start/End: Complemental strand, 45203135 - 45202962
Alignment:
Q  125 ttccttgtataagttatttttaacagtgaattatgttgagcttgcatgattactttctttctccaattttattaatgcagggagcagcaacaacatgcta 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45203135 ttccttgtataagttatttttaatagtgaattatgttgagcttgcatgattactttctttctccaattttattaatgcagggagcagcaacaacatgcta 45203036  T
Q  225 tgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacagtaatgtgtacaaaacaaccc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45203035 tgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacagtaatgtgtacaaaacaaccc 45202962  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 45209435 - 45209348
Alignment:
Q  198 aatgcagggagcagcaacaacatgctatgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacagtaatgtg 285  Q
    |||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45209435 aatgtagggggcagccacaacctgctatgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacaataatgtg 45209348  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 45245598 - 45245511
Alignment:
Q  198 aatgcagggagcagcaacaacatgctatgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacagtaatgtg 285  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  45245598 aatgtagggggcagccacaacatgctatgtagcattgcacccacaagtgaagggagttagtggtgagtatttttcagacaataatgtg 45245511  T

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Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 198 - 285
Target Start/End: Complemental strand, 45228239 - 45228152
Alignment:
Q  198 aatgcagggagcagcaacaacatgctatgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacagtaatgtg 285  Q
    |||| |||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  45228239 aatgtagggggcagccactacatgctatgtagcattgcacccgcaagtgaagggagttagtggtgaatatttttcagagagtaatgtg 45228152  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 45203481 - 45203426
Alignment:
Q  3 taaaatttaatttgatattaatataaataaatggtgttaaatttcaagtttaaagc 58  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45203481 taaaatttaatttcatattaatataaataaatggtgttaaatttcaagtttaaagc 45203426  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 45203597 - 45203652
Alignment:
Q  3 taaaatttaatttgatattaatataaataaatggtgttaaatttcaagtttaaagc 58  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45203597 taaaatttaatttgatattaatataaataaatgatgttaaatttcaagtttaaagc 45203652  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 45203361 - 45203297
Alignment:
Q  63 tgaggggtactttcgtcttttattaatgtttctcagacaaaccacatatgtcaacagcaattttc 127  Q
    ||||||||| ||||||| |||| |  |||||||||  ||||||||||||||||||||||||||||    
T  45203361 tgaggggtattttcgtcctttactcgtgtttctcaatcaaaccacatatgtcaacagcaattttc 45203297  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 19274518 - 19274436
Alignment:
Q  203 agggagcagcaacaacatgctatgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacagtaatgtg 285  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||  |||||||  | | |||||  ||||||||||||    
T  19274518 agggagcagcaacaacatgctatgtagcattgaacccaaaagtgaagggtattagtggaaagtttttttgtgacagtaatgtg 19274436  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 19291135 - 19291053
Alignment:
Q  203 agggagcagcaacaacatgctatgtagcattgcacccacaagtgaagggagttagtggtgaatatttttcagacagtaatgtg 285  Q
    |||||||||||||||||||||||||||||||| | |||||  |||| ||  |||||||  | | |||||| ||||||||||||    
T  19291135 agggagcagcaacaacatgctatgtagcattgaatccacagctgaatggtattagtggaaagtttttttctgacagtaatgtg 19291053  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 31791459 - 31791421
Alignment:
Q  89 tgtttctcagacaaaccacatatgtcaacagcaattttc 127  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  31791459 tgtttctcagtcaaaccacatatgtcaacaacaattttc 31791421  T

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