View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_61 (Length: 314)
Name: NF2748_low_61
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 295
Target Start/End: Original strand, 1518914 - 1519175
Alignment:
| Q |
34 |
caccaaatgacatacagaaaacatattcagatccttatcatcaaaaatatctggccactttccatatccatgccttaatagaaaagaactatgtatgtta |
133 |
Q |
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| T |
1518914 |
caccaaatgacatacagaaaacatattcagatccttatcatcaacaatatctggccactttccatatccatgccttaatagaaaagaactatgtatgtta |
1519013 |
T |
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| Q |
134 |
gaggattacataacctataaagattacnnnnnnnnnnnnncatgcaaaatcgtttttcattaaatgacataaaatggaaggtaacatacgtagnnnnnnn |
233 |
Q |
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| T |
1519014 |
gaggattacataacctataaagattacaaaaaagcaaaaacatgcaaaatcgtttttcattaaatgacataaaatggaaggtaacatacgtagacacaca |
1519113 |
T |
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| Q |
234 |
nnnnnnnngacattatggatagatgcaatgcaattatctatatatctattaaaagacacttt |
295 |
Q |
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| T |
1519114 |
cacacacagacattatggatagatgcaatgcaattatctatatatctattaaaagacacttt |
1519175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 2910768 - 2910852
Alignment:
| Q |
56 |
atattcagatccttatcatcaaaaatatctggccactttccatatccatgccttaatagaaaagaactatgtatgttagaggattacat |
144 |
Q |
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| T |
2910768 |
atattcagatccttatcatcaacaatatcatgccactttccatatccatgccttaatagaaaagaactatg----ttagaggattacat |
2910852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 2910893 - 2910945
Alignment:
| Q |
174 |
catgcaaaatcgtttttcattaaatgacataaaatggaaggtaacatacgtag |
226 |
Q |
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| T |
2910893 |
catgcaaaatcgtttttcattgaatgaaataaaatggagggtgacatacgtag |
2910945 |
T |
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