View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_65 (Length: 293)
Name: NF2748_low_65
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 42485114 - 42485370
Alignment:
| Q |
18 |
acgcgcacacggaacagcgcgtgttcgttggcggttcattaaccgatccagaaacagttcaaggatggcatatgttaaccgaattagttgaaccggtcgg |
117 |
Q |
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| T |
42485114 |
acgcgcacacggaacagcgcgtgttcgttggcggttcattaaccgatccagaaacagttcaaggatggcatatgttaaccgaattagttgaaccggtcgg |
42485213 |
T |
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| Q |
118 |
tcgagtccgagtcactgaaagagaatttgtagtagcttgcacaagtacaagattagtttgtttcaacttaagaaacccagaggttctattacgtgatgta |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42485214 |
tcgagtccgagtcaccgaaagagaatttgtagtagcttgcacaagtacaagattagtttgtttcaacttaagaaacccagaggttctattacgtgatgta |
42485313 |
T |
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| Q |
218 |
gtgtccacgacaggattcattgttggatcattggatgttagccatgaggtttttgtt |
274 |
Q |
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| T |
42485314 |
gtgtccacgacaggattcattgttggatcattggatgttagccatgaggtttttgtt |
42485370 |
T |
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