View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_66 (Length: 293)
Name: NF2748_low_66
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_66 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 12468347 - 12468632
Alignment:
| Q |
1 |
catctattaatttttatttatattattctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttttattgtgttgattttatcgtatatagtta |
100 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12468347 |
catcgattaatttttatttatattatgctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttttattgtgctgattttatcgtatatagtta |
12468446 |
T |
|
| Q |
101 |
taannnnnnnnnggaaaataccacaatcaaatcaacttttaacttatattgttcatattgtagtgaaattgttactctttattctagtttggccaaggcc |
200 |
Q |
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||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
12468447 |
taatttttttttgtaaaataacacaatcaaatcaacttttaacttatattgttcatattgtagtggaattgttgctctttattctggtttggccaaggcc |
12468546 |
T |
|
| Q |
201 |
aacccgttgataggttttggatgtcccttccacaagggccataagaaccatgatatggacctcactcgaaaccgcactagaataat |
286 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
12468547 |
aacccgttaataggttttggatatcccttccacaagggccatgagaatcatgatatggacctcactcgaaaccgcactggaataat |
12468632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 12465708 - 12465993
Alignment:
| Q |
1 |
catctattaatttttatttatattattctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttttattgtgttgattttatcgtatatagtta |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||| |
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| T |
12465708 |
catctattaatttttatttatattatgctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttt-attgtgcttattttatcgtatatagtta |
12465806 |
T |
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| Q |
101 |
taannnnnnnnn-ggaaaataccacaatcaaatcaacttttaacttatattgttcatattgtagtgaaattgttactctttattctagtttggccaaggc |
199 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| |
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| T |
12465807 |
taattttttttttggaaaatatcacaatcaaatcaacttttaacttatattgttcatatcgtagtggaattgttactctttattctggtttggccaaggt |
12465906 |
T |
|
| Q |
200 |
caacccgttgataggttttggatgtcccttccacaagggccataagaaccatgatatggacctcactcgaaaccgcactagaataat |
286 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||||||| |
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| T |
12465907 |
taacccgttgataggttttggatatcccttccacaagggccatgagaatcatgatatggacctcactcaaaaccgcactggaataat |
12465993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 12484477 - 12484756
Alignment:
| Q |
1 |
catctattaatttttatttatattattctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttttattgtgttgattttatcgtatatagtta |
100 |
Q |
| |
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||||||||||||||||| ||| |||||||||||||| | |||||||||||| |||||| ||||| |||||||||||| | ||||||||||||||||||| |
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| T |
12484477 |
catctattaatttttatctat--tattctagtgtcaaggtgatcactaatgtttttgtcttattgtttttttattgtgcttattttatcgtatatagtta |
12484574 |
T |
|
| Q |
101 |
taannnnnnnnnggaaaataccacaatcaaatcaacttttaacttatattgttcatattgtagtgaaattgttactctttattctagtttggccaaggcc |
200 |
Q |
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| T |
12484575 |
aaaaaaatt----gaaaataccacaattaaaccaacttttaacttatattgttcatattgtagtggaattgttactctttattttggtttggccaaggcc |
12484670 |
T |
|
| Q |
201 |
aacccgttgataggttttggatgtcccttccacaagggccataagaaccatgatatggacctcactcgaaaccgcactagaataat |
286 |
Q |
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| T |
12484671 |
aaccccttcataggttttggatatctcttccacaagggccataagaaccatgatatggacctcactcgaaaccttactggaataat |
12484756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 36000 - 35721
Alignment:
| Q |
1 |
catctattaatttttatttatattattctagtgtcaatgcgatcactaatgtgtttgtcatattgcttttttattgtgttgattttatcgtatatagtta |
100 |
Q |
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||||||||||||||||| ||| |||||||||||||| | |||||||||||| |||||| ||||| |||||||||||| | ||||||||||||||||||| |
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| T |
36000 |
catctattaatttttatctat--tattctagtgtcaaggtgatcactaatgtttttgtcttattgtttttttattgtgcttattttatcgtatatagtta |
35903 |
T |
|
| Q |
101 |
taannnnnnnnnggaaaataccacaatcaaatcaacttttaacttatattgttcatattgtagtgaaattgttactctttattctagtttggccaaggcc |
200 |
Q |
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|| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |
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| T |
35902 |
aaaaaaatt----gaaaataccacaattaaaccaacttttaacttatattgttcatattgtagtggaattgttactctttattttggtttggccaaggcc |
35807 |
T |
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| Q |
201 |
aacccgttgataggttttggatgtcccttccacaagggccataagaaccatgatatggacctcactcgaaaccgcactagaataat |
286 |
Q |
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| T |
35806 |
aaccccttcataggttttggatatctcttccacaagggccataagaaccatgatatggacctcactcgaaaccttactggaataat |
35721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 254775 - 254835
Alignment:
| Q |
113 |
ggaaaataccacaatcaaatcaacttttaacttatattgttcatattgtagtgaaattgtt |
173 |
Q |
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|||| ||||||||||||||| || ||||||||||||||||||| ||| |||| ||||||| |
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| T |
254775 |
ggaatataccacaatcaaataaagatttaacttatattgttcatgttgcagtggaattgtt |
254835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 23029410 - 23029462
Alignment:
| Q |
113 |
ggaaaataccacaatcaaatcaacttttaacttatattgttcatattgtagtg |
165 |
Q |
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|||| |||||| |||||||| || ||||||||||||||||| |||||||||| |
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| T |
23029410 |
ggaatataccataatcaaataaagatttaacttatattgttcctattgtagtg |
23029462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 28011702 - 28011754
Alignment:
| Q |
113 |
ggaaaataccacaatcaaatcaacttttaacttatattgttcatattgtagtg |
165 |
Q |
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|||| |||||| |||||||| || ||||||||||||||||| |||||||||| |
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| T |
28011702 |
ggaatataccataatcaaataaagatttaacttatattgttcctattgtagtg |
28011754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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