View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_low_69 (Length: 289)

Name: NF2748_low_69
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_low_69
NF2748_low_69
[»] chr3 (2 HSPs)
chr3 (22-215)||(11498738-11498931)
chr3 (210-284)||(11498995-11499069)
[»] chr2 (2 HSPs)
chr2 (99-137)||(24600602-24600640)
chr2 (99-137)||(24613474-24613512)
[»] chr1 (1 HSPs)
chr1 (150-211)||(38148441-38148503)
[»] chr6 (1 HSPs)
chr6 (151-211)||(25346056-25346117)
[»] chr8 (3 HSPs)
chr8 (101-137)||(27812521-27812557)
chr8 (150-211)||(39733022-39733086)
chr8 (22-66)||(27812590-27812634)
[»] chr5 (1 HSPs)
chr5 (101-137)||(2308201-2308237)
[»] chr4 (2 HSPs)
chr4 (102-137)||(54205091-54205126)
chr4 (34-66)||(54205019-54205051)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 22 - 215
Target Start/End: Original strand, 11498738 - 11498931
Alignment:
Q  22 tacggtacccgatacgggtacgggatacgacatttctcaaaaaactactaaggtagagtcaagataatannnnnnnnatttaaaataacatagcatgtgg 121  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||    
T  11498738 tacggtacccgataccggtacgggatacgacatttctcaaaaaactactaagatagagtcaagataatattttttttatttaaaataacatagcatgtgg 11498837  T
Q  122 aaattatattgctcaaatatattcaatactatgtttattgtcgcttttatgtgtttttgtaaatgcattgttatacacacttaggtgttgattt 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11498838 aaattatattgctcaaatatattcaatattatgtttattgtcgcttttatgtgtttttgtaaatgcattgttatacacacttaggtgttgattt 11498931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 11498995 - 11499069
Alignment:
Q  210 tgatttatgattttttgttatgtgtacttgtcagttaagaaggaactgtgatcttacctacttacctttgctact 284  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||| ||||    
T  11498995 tgatttatgattttttgttatgtgtagttgtcagttaggaaggaactgtgatcttacttacttacttttgttact 11499069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 24600640 - 24600602
Alignment:
Q  99 atttaaaataacatagcatgtggaaattatattgctcaa 137  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  24600640 atttaaaataacatagcatgaggaaattatattgctcaa 24600602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 24613474 - 24613512
Alignment:
Q  99 atttaaaataacatagcatgtggaaattatattgctcaa 137  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  24613474 atttaaaataacatagcatgaggaaattatattgctcaa 24613512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 38148503 - 38148441
Alignment:
Q  150 ctatgtttattgtcgcttttatgtgtt-tttgtaaatgcattgttatacacacttaggtgttg 211  Q
    |||||||| |||||||||||||||| | |||||||||||||||| |||||||| | |||||||    
T  38148503 ctatgtttgttgtcgcttttatgtgatatttgtaaatgcattgtcatacacacgttggtgttg 38148441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 25346056 - 25346117
Alignment:
Q  151 tatgtttattgtcgcttttatgtgtt-tttgtaaatgcattgttatacacacttaggtgttg 211  Q
    ||||||| |||||||||||||||| | |||||||||||||||| |||||||| | |||||||    
T  25346056 tatgtttgttgtcgcttttatgtgatatttgtaaatgcattgtcatacacacgttggtgttg 25346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 27812557 - 27812521
Alignment:
Q  101 ttaaaataacatagcatgtggaaattatattgctcaa 137  Q
    |||||||||||||||||| ||||||||||||||||||    
T  27812557 ttaaaataacatagcatgaggaaattatattgctcaa 27812521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 39733086 - 39733022
Alignment:
Q  150 ctatgtttattgtcgcttttatgtg-tttttgtaaatgcattgt--tatacacacttaggtgttg 211  Q
    |||||||| |||||||||||||||| | ||||||||||||||||  ||||||||| | |||||||    
T  39733086 ctatgtttgttgtcgcttttatgtgatatttgtaaatgcattgtcatatacacacgttggtgttg 39733022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 27812634 - 27812590
Alignment:
Q  22 tacggtacccgatacgggtacgggatacgacatttctcaaaaaac 66  Q
    ||||||||||| ||| |||| |||||||| |||||||||||||||    
T  27812634 tacggtacccggtacaggtatgggatacggcatttctcaaaaaac 27812590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 2308237 - 2308201
Alignment:
Q  101 ttaaaataacatagcatgtggaaattatattgctcaa 137  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2308237 ttaaaataacatagcatgaggaaattatattgctcaa 2308201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 137
Target Start/End: Original strand, 54205091 - 54205126
Alignment:
Q  102 taaaataacatagcatgtggaaattatattgctcaa 137  Q
    ||||||||||||||||| ||||||||||||||||||    
T  54205091 taaaataacatagcatgaggaaattatattgctcaa 54205126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 54205019 - 54205051
Alignment:
Q  34 tacgggtacgggatacgacatttctcaaaaaac 66  Q
    ||||||||||||||||| |||||||||||||||    
T  54205019 tacgggtacgggatacgtcatttctcaaaaaac 54205051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University