View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_70 (Length: 288)
Name: NF2748_low_70
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 37105206 - 37105043
Alignment:
| Q |
1 |
ttcttcattttttgtgtctaggttcaatgaatgtatgtaacacctttccttcctagatccctttatttctaattgtattaattaattgataattaaagga |
100 |
Q |
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| T |
37105206 |
ttcttcattttatgtgtctaggttcaatgaatgtatgtaacacctttc-ttcctagatccctttatttctaattgtattaattaattgataattaaagga |
37105108 |
T |
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| Q |
101 |
tttattaaacagacccatttatttaacatattttgttaaatattagaagaaatcgaactcacttt |
165 |
Q |
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| T |
37105107 |
tttattaaacagacccatttatttaacatattttgttaaatattagaagaaatcgaactcacttt |
37105043 |
T |
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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 37105059 - 37104982
Alignment:
| Q |
186 |
gaaatcgaactcacttttcttttcatattattcaatagcacactctcaactaagatgggttggatttagcgaaagagg |
263 |
Q |
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| T |
37105059 |
gaaatcgaactcacttttcttttcatattattcaatagcacactctcaactaaggtgggttggatttagcgaaagagg |
37104982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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