View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2748_low_77 (Length: 272)

Name: NF2748_low_77
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2748_low_77
NF2748_low_77
[»] chr3 (22 HSPs)
chr3 (1-272)||(4826402-4826668)
chr3 (1-174)||(4841830-4841997)
chr3 (1-166)||(4871530-4871689)
chr3 (1-174)||(4835144-4835312)
chr3 (1-174)||(4852478-4852646)
chr3 (1-174)||(4856449-4856617)
chr3 (1-174)||(4878184-4878352)
chr3 (1-166)||(4845771-4845930)
chr3 (134-272)||(4837426-4837567)
chr3 (1-162)||(4860747-4860904)
chr3 (1-162)||(4880754-4880911)
chr3 (199-264)||(4842951-4843016)
chr3 (199-264)||(4868647-4868712)
chr3 (199-268)||(4856667-4856740)
chr3 (199-268)||(4878402-4878475)
chr3 (199-272)||(4842043-4842120)
chr3 (233-272)||(4835382-4835421)
chr3 (142-174)||(4842873-4842905)
chr3 (142-174)||(4868569-4868601)
chr3 (2-66)||(4536818-4536879)
chr3 (218-272)||(4836188-4836242)
chr3 (228-268)||(4846091-4846131)
[»] chr7 (1 HSPs)
chr7 (1-145)||(21703749-21703888)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 4826402 - 4826668
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||     ||||||||||||||||||    
T  4826402 cataagagcagcaaggaataccactagcaaggataagaaaaaggaattagccactttaagaagtgatattattatta-----gtgttggtgcataataca 4826496  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaattcaagaatgttacactcataggtgcc 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4826497 tagagagttaactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaattcaagaatgttacactcataggtacc 4826596  T
Q  201 atgtatttgctacttgttgatgatcagtacctatcctttcattttccacacaacaagatcatttagtattat 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4826597 atgtatttgctacttgttgatgatcagtacctatcctttcattttccacacaacaagaccatttagtattat 4826668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4841830 - 4841997
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  4841830 cataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatattatta------ttgtgttggtgcataataca 4841923  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat 174  Q
    ||  || || ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  4841924 tatggaattaactggttttatactaattagagactcaatgtgagtttatggtcaatctaagttatttactaaat 4841997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4871530 - 4871689
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  4871530 cataaaagcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattatta------ttgtgttggtgcataataca 4871623  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatt 166  Q
    ||  ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4871624 tatggagttaactggctttatactagttagagactcaatgtgagtttatggtcaatctaagtcatt 4871689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4835144 - 4835312
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    |||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||     ||||||||||||||||||    
T  4835144 cataagagcagcaaggaataccactagcaaggataagaaaaaggatttagccattttaagaagtgatattattatta-----gtgttggtgcataataca 4835238  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat 174  Q
    ||  ||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  4835239 tatggagttaactggttttatactaattagagactcaaagtgagtttatggtcaatcaaagtcatttactaaat 4835312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4852478 - 4852646
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    ||||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||     ||||||||||||||||||    
T  4852478 cataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattatta-----gtgttggtgcataataca 4852572  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat 174  Q
    ||  ||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4852573 tatggagtatactggttttatactagttagagactcaatgtgagtttatggtcgatctaagtcatttactaaat 4852646  T

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Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4856449 - 4856617
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    ||||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||     ||||||||||||||||||    
T  4856449 cataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattatta-----gtgttggtgcataataca 4856543  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat 174  Q
    ||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4856544 tatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaat 4856617  T

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Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 4878184 - 4878352
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    ||||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| ||     ||||||||||||||||||    
T  4878184 cataaaagcagcaaggaataacactaataaggataagaaaaatgaattagccattttaagaagtgatataattatta-----gtgttggtgcataataca 4878278  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatttactaaat 174  Q
    ||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4878279 tatggagtatactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatgtactaaat 4878352  T

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Target: chr3; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 4845771 - 4845930
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
T  4845771 cataaaagcagcaaggaataacactaataaggataagaaaaaggaattagccattttaagaagtgatattatta------ttgtgttggtgcataataca 4845864  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagtttatggtcaatctaagtcatt 166  Q
    |||  |||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4845865 taggtagttaactggctttatactagttagagactcaatgtgattttttggtcaatctaagtcatt 4845930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 4837426 - 4837567
Alignment:
Q  134 ctcaatgtgagtttatggtcaatctaagtcatttactaaattcaagaatgttacactcataggtgccat---gtatttgctacttgttgatgatcagtac 230  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||   |||||||||| || |||||||||||||     
T  4837426 ctcaatgtgagtttatggtcaatataagtcatttactaaattcaacaatgctacactcataggtaccatgtagtatttgctagttattgatgatcagtag 4837525  T
Q  231 ctatcctttcattttccacacaacaagatcatttagtattat 272  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  4837526 ctatcctttcattttccacacaacaagaccatttagtattat 4837567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 4860747 - 4860904
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||     ||||||||||||||||||    
T  4860747 cataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatataattatta-----gtgttggtgcataataca 4860841  T
Q  101 tagagagtt-cactggttttatactagttagagactcaatgtgagtttatggtcaatctaagt 162  Q
    ||| |||||  ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  4860842 tagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatcaaagt 4860904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 4880754 - 4880911
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||     ||||||||||||||||||    
T  4880754 cataagagcagcaaggaataacactaataaggataagaaaaaggatttagccattttaagaagtgatataattatta-----gtgttggtgcataataca 4880848  T
Q  101 tagagagtt-cactggttttatactagttagagactcaatgtgagtttatggtcaatctaagt 162  Q
    ||| |||||  ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  4880849 tagggagttaaactggttttatactagttagagactcaatgtgagtctatcgtcaatcaaagt 4880911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 4842951 - 4843016
Alignment:
Q  199 ccatgtatttgctacttgttgatgatcagtacctatcctttcattttccacacaacaagatcattt 264  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||| ||||| ||| |||||    
T  4842951 ccatgtatttgctactagttgatgatcactaactatcctttcattttccatacaactagaccattt 4843016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 4868647 - 4868712
Alignment:
Q  199 ccatgtatttgctacttgttgatgatcagtacctatcctttcattttccacacaacaagatcattt 264  Q
    |||||||||||||||| ||||||||||| || |||||||||||||||||| ||||| ||| |||||    
T  4868647 ccatgtatttgctactagttgatgatcactaactatcctttcattttccatacaactagaccattt 4868712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 4856667 - 4856740
Alignment:
Q  199 ccatgtatttgctacttgttgatgatcagt----acctatcctttcattttccacacaacaagatcatttagta 268  Q
    |||||||||||||||| |||||||||||||    ||||||||||| |||||||||||||||||| |||| ||||    
T  4856667 ccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccacacaacaagaccattcagta 4856740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 4878402 - 4878475
Alignment:
Q  199 ccatgtatttgctacttgttgatgatcagt----acctatcctttcattttccacacaacaagatcatttagta 268  Q
    |||||||||||||||| |||||||||||||    ||||||||||| |||||||||||||||||| |||| ||||    
T  4878402 ccatgtatttgctactagttgatgatcagtccctacctatcctttaattttccacacaacaagaccattcagta 4878475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 4842043 - 4842120
Alignment:
Q  199 ccatgtatttgctacttgttgatgatcagtacctatcc----tttcattttccacacaacaagatcatttagtattat 272  Q
    |||||||||||||||| ||||||||||| || ||||||    |||||||||||| ||| ||||| |||||||||||||    
T  4842043 ccatgtatttgctactagttgatgatcattaactatccttaatttcattttccatacagcaagaccatttagtattat 4842120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 4835382 - 4835421
Alignment:
Q  233 atcctttcattttccacacaacaagatcatttagtattat 272  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  4835382 atcctttcattttccacacaacaagaccatttagtattat 4835421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 4842873 - 4842905
Alignment:
Q  142 gagtttatggtcaatctaagtcatttactaaat 174  Q
    |||||||||||||||||||||||||||||||||    
T  4842873 gagtttatggtcaatctaagtcatttactaaat 4842905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 4868569 - 4868601
Alignment:
Q  142 gagtttatggtcaatctaagtcatttactaaat 174  Q
    |||||||||||||||||||||||||||||||||    
T  4868569 gagtttatggtcaatctaagtcatttactaaat 4868601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 4536818 - 4536879
Alignment:
Q  2 ataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtga 66  Q
    ||||| |||||||||||||||| ||||||||||| | |||| ||   ||||||||||||||||||    
T  4536818 ataagggcagcaaggaacaacaatagtaaggataggtaaaatga---agccattttaagaagtga 4536879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 4836188 - 4836242
Alignment:
Q  218 tgatgatcagtacctatcctttcattttccacacaacaagatcatttagtattat 272  Q
    ||||||||||||| |||||||| ||||| ||||| | || |||||||||||||||    
T  4836188 tgatgatcagtacatatcctttaattttacacaccataaaatcatttagtattat 4836242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 4846091 - 4846131
Alignment:
Q  228 tacctatcctttcattttccacacaacaagatcatttagta 268  Q
    |||||||||||| |||||||||||||||||| |||| ||||    
T  4846091 tacctatcctttaattttccacacaacaagaccattcagta 4846131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 21703888 - 21703749
Alignment:
Q  1 cataagagcagcaaggaacaacactagtaaggataagaaaaaggaattagccattttaagaagtgatattattactagtgttgtgttggtgcataataca 100  Q
    ||||||||||||  |||| | |||||||||||| |||||||| |||||||||||||||||||||||||||| || ||     |||||||||||||| |||    
T  21703888 cataagagcagcgtggaataccactagtaaggacaagaaaaaagaattagccattttaagaagtgatattaatatta-----gtgttggtgcataagaca 21703794  T
Q  101 tagagagttcactggttttatactagttagagactcaatgtgagt 145  Q
    |||  |||| || ||||||||||||||||||||||||||| ||||    
T  21703793 taggaagttaaccggttttatactagttagagactcaatgggagt 21703749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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