View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_80 (Length: 267)
Name: NF2748_low_80
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 21011052 - 21010907
Alignment:
| Q |
19 |
tatcttgggcttactactaccaaggaaaggtacctacttcttttctttcattacaaatattgattcttcatagttgcattttataggcatataaaatact |
118 |
Q |
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| T |
21011052 |
tatcttgggcttactactaccaaggaaaggtacctacttcttttctttcattacaaatattgattcttcatagttgcattttataggcatataaaatact |
21010953 |
T |
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| Q |
119 |
tgtaatttgaggaccaactattcatccaaaatgtttataagactaa |
164 |
Q |
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| T |
21010952 |
tgtaatttgaggaccaactattcatccaaaatgtttataagactaa |
21010907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 21010866 - 21010813
Alignment:
| Q |
214 |
attaatttcattgcaatttttgtgatatagtcaatggatgagttgaagcaaacc |
267 |
Q |
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| T |
21010866 |
attaatttcattgcaatttttgtgatatagtcaatggatgagttgaagcaaacc |
21010813 |
T |
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