View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_81 (Length: 267)
Name: NF2748_low_81
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_81 |
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| [»] scaffold0157 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 12465172 - 12464950
Alignment:
| Q |
19 |
aatatttcattt-atttttctaattaaaattattttctagaagaaaattcctaacacgtannnnnnnnnnnnncatcttatagaaaaagcatgattggga |
117 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| |
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| T |
12465172 |
aatatttcattttatttttataattaaaattattttctagaagaaaattcctaacacat-----tttttttttcatcttatagaaaaagtatgattggga |
12465078 |
T |
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| Q |
118 |
aaacgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatatttgttctctaaaattttgcatatggc |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12465077 |
aaacgatgattcaggagttgcttcaagaggagattggtggaaaggtatcctttgacaatgtttgataaatatatttgttctctaaaattttgcatatggc |
12464978 |
T |
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| Q |
218 |
tggaactagagtgacctaacattctcat |
245 |
Q |
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| T |
12464977 |
tggaactagagtggcctaacattctcat |
12464950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 245
Target Start/End: Complemental strand, 12483800 - 12483638
Alignment:
| Q |
92 |
atcttatagaaaaagcatgattgggaaaacgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatat |
191 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||| |
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| T |
12483800 |
atcttatagacaaagtatgattgggaaaacaatgattcagaagttgcttcaagaggagattggtggaaaggtatcttatgataatgcttgatatatatat |
12483701 |
T |
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| Q |
192 |
---------ttgttctctaaaattttgcatatggctggaactagagtgacctaacattctcat |
245 |
Q |
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| T |
12483700 |
atatatatattgttctctaaacttttgcatatgaatggaactagagtggcctaacattctcat |
12483638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 12483872 - 12483820
Alignment:
| Q |
20 |
atatttcattt-atttttctaattaaaattattttctagaagaaaattcctaa |
71 |
Q |
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| T |
12483872 |
atatttcattttatttttataattaaaattattttctagtagcaaattcctaa |
12483820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 36677 - 36839
Alignment:
| Q |
92 |
atcttatagaaaaagcatgattgggaaaacgatgattcaggagctgcttcaagaggagattggtggaaaggtatcatttgacaatgtttgataaatatat |
191 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||| | ||| |||| |||||| |||||| |
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| T |
36677 |
atcttatagacaaagtatgattgggaaaacaatgattcagaagttgcttcaagaggagattggtggaaaggtatcttatgataatgcttgatatatatat |
36776 |
T |
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| Q |
192 |
---------ttgttctctaaaattttgcatatggctggaactagagtgacctaacattctcat |
245 |
Q |
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| T |
36777 |
atatatatattgttctctaaacttttgcatatgaatggaactagagtggcctaacattctcat |
36839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 36605 - 36657
Alignment:
| Q |
20 |
atatttcattt-atttttctaattaaaattattttctagaagaaaattcctaa |
71 |
Q |
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||||||||||| |||||| |||||||||||||||||||| || |||||||||| |
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| T |
36605 |
atatttcattttatttttataattaaaattattttctagtagcaaattcctaa |
36657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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