View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2748_low_87 (Length: 253)
Name: NF2748_low_87
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_87 |
 | |
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| [»] chr8 (12 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 6362010 - 6361773
Alignment:
| Q |
16 |
aataacacccaagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggt |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6362010 |
aataacacccaagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggt |
6361911 |
T |
|
| Q |
116 |
gatctctggacttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6361910 |
gatctctggacttctgattcacagccaaaagagtcctttaagaggtttggaaagaagttggctgaaattgagcaaaaactcattcaaaggaacaatgatg |
6361811 |
T |
|
| Q |
216 |
agacactgaggaatcgtaacggaccagtgaagatgcct |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
6361810 |
agacactgaggaatcgtaacggaccagtgaagatgcct |
6361773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 7470258 - 7470034
Alignment:
| Q |
26 |
aagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatctctgga |
125 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7470258 |
aagaatgatacccttactaacttgaccatcttagaggtcttgtcaaggcatgcttctgatgaacaataccttggagagagaattgaaggtgatctctgga |
7470159 |
T |
|
| Q |
126 |
cttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagacactgag |
225 |
Q |
| |
|
|||||||||||||||||||| || ||| |||| ||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
7470158 |
cttctgattcacagccaaaacaggcctacaagaagtttggaaagaagttgtctgaaattgagaaaaacctcattcaaaggaacaatgatgagacactgag |
7470059 |
T |
|
| Q |
226 |
gaatcgtaacggaccagtgaagatg |
250 |
Q |
| |
|
|||||| || ||||| ||||||||| |
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|
| T |
7470058 |
gaatcgaaatggacctgtgaagatg |
7470034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 7457856 - 7457630
Alignment:
| Q |
26 |
aagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatctctgga |
125 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
7457856 |
aagaatgatacccttactaacttgaccatcttagaggtcttgtcaaggcatgcttctgatgaacaataccttggagagagaattgaaggtgatctctgga |
7457757 |
T |
|
| Q |
126 |
cttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagacactgag |
225 |
Q |
| |
|
||||||||||||| |||||| || ||| |||| ||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
7457756 |
cttctgattcacaaccaaaacaggcctacaagaagtttggaaagaagttggctgaaatcgagaaaaacctcattcaaaggaacaatgatgagacactgag |
7457657 |
T |
|
| Q |
226 |
gaatcgtaacggaccagtgaagatgcc |
252 |
Q |
| |
|
|||||| || ||||| ||||||||||| |
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|
| T |
7457656 |
gaatcgaaatggacctgtgaagatgcc |
7457630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 6351121 - 6350889
Alignment:
| Q |
20 |
acacccaagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatc |
119 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
6351121 |
acaccaaagaatgatacacttactgacttgaccattatagaggtcttgtcaaggcatgcttctgatgagcaataccttggagatagaattgaaggtgaca |
6351022 |
T |
|
| Q |
120 |
tctggacttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagac |
219 |
Q |
| |
|
|||||||| |||||||| |||||||| |||| |||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||| |
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|
| T |
6351021 |
attggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaactcactcaaaggaacaatgatgagac |
6350922 |
T |
|
| Q |
220 |
actgaggaatcgtaacggaccagtgaagatgcc |
252 |
Q |
| |
|
| |||| ||||| ||||||||||||||||||| |
|
|
| T |
6350921 |
attgagaaatcggtacggaccagtgaagatgcc |
6350889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 45 - 252
Target Start/End: Complemental strand, 6287558 - 6287351
Alignment:
| Q |
45 |
acttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatctctggacttctgattcacagccaaa |
144 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
6287558 |
acttgactgttatagaagtcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgataattggacttctgattcacaaccaaa |
6287459 |
T |
|
| Q |
145 |
agagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagacactgaggaatcgtaacggaccagtg |
244 |
Q |
| |
|
|||| | || |||||||||||||| ||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||| |
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|
| T |
6287458 |
agaggctttcaagaggtttggaaagaagctggctgaaattgagaaaaaactcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtg |
6287359 |
T |
|
| Q |
245 |
aagatgcc |
252 |
Q |
| |
|
|||||||| |
|
|
| T |
6287358 |
aagatgcc |
6287351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 6273311 - 6273100
Alignment:
| Q |
41 |
actgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatctctggacttctgattcacagc |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
6273311 |
actgacttgaccattatagaggtcttgtcaagacatgcttctgatgaacaataccttggacagagaattgaaggtgatctttggacttctgattcacaac |
6273212 |
T |
|
| Q |
141 |
caaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagacactgaggaatcgtaacggacc |
240 |
Q |
| |
|
|| |||| | || ||||| || |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||| | ||||| |
|
|
| T |
6273211 |
cattagaggctttcaagagattcggaacaaagttggctgaaattgaacaaaaactcactcaaaggaacaatgatgagactctaaggaatcgatatggacc |
6273112 |
T |
|
| Q |
241 |
agtgaagatgcc |
252 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6273111 |
agtgaagatgcc |
6273100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 6423038 - 6422806
Alignment:
| Q |
20 |
acacccaagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatc |
119 |
Q |
| |
|
|||||||||| |||||| ||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
6423038 |
acacccaagagtgatacccttacagaccttaccattattgaagtcttgtcaaggcatgcttctgatgagcaataccttggggagagaatcgaaggtgatc |
6422939 |
T |
|
| Q |
120 |
tctggacttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagac |
219 |
Q |
| |
|
| |||||||||||| |||||||||||||| ||| |||| ||||| || |||||||||||||||||| |||| || || |||||||| ||| ||| | |
|
|
| T |
6422938 |
tttggacttctgatgcacagccaaaagaggcctacaagaagtttgcaaggaagttggctgaaattgaggaaaagctagttaaaaggaacgctgacgagtc |
6422839 |
T |
|
| Q |
220 |
actgaggaatcgtaacggaccagtgaagatgcc |
252 |
Q |
| |
|
| |||| || || |||| || ||||||||||| |
|
|
| T |
6422838 |
attgagaaaccgatacgggcctgtgaagatgcc |
6422806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 252
Target Start/End: Complemental strand, 6320211 - 6319979
Alignment:
| Q |
20 |
acacccaagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatc |
119 |
Q |
| |
|
||||| || |||||||| || |||||| | || || ||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
6320211 |
acaccaaaaaatgataccctaactgaccttacaatcatagaggtcttgtcaaggcatgcttctgatgagcaataccttggacagagaaatgaaggtgagg |
6320112 |
T |
|
| Q |
120 |
tctggacttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgagac |
219 |
Q |
| |
|
||||||| ||||||||||||| ||| | || ||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||| | |
|
|
| T |
6320111 |
cttggacttttgattcacagccattagaagctttcaagaggtttggaaggaagttggctgaaattgaggcaaagctcatcaaaaggaacaatgatgagtc |
6320012 |
T |
|
| Q |
220 |
actgaggaatcgtaacggaccagtgaagatgcc |
252 |
Q |
| |
|
| |||| || || |||| || ||||||||||| |
|
|
| T |
6320011 |
attgagaaaccgatacgggcctgtgaagatgcc |
6319979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 6330673 - 6330476
Alignment:
| Q |
20 |
acacccaagaatgatactcttactgacttgaccattatagaagtcttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatc |
119 |
Q |
| |
|
||||| || |||||||| || |||||| | || || |||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||| || |
|
|
| T |
6330673 |
acaccaaaaaatgataccctcactgaccttacgatcttagaggtcttatcaaggcatgcttctgatgagcaataccttggacagagaaatgaaggcgagg |
6330574 |
T |
|
| Q |
120 |
tctggacttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatgag |
217 |
Q |
| |
|
| |||||||| |||||||||||| ||| | || ||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||| |
|
|
| T |
6330573 |
tttggacttcagattcacagccattagaagctttcaagaggtttggaaggaagttggctgaaattgaggtaaagctcattgaaaggaacaatgatgag |
6330476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 65 - 216
Target Start/End: Complemental strand, 6389718 - 6389567
Alignment:
| Q |
65 |
ttgtcaaggcatgcttctgatgagcaataccttggagagagaattgaaggtgatctctggacttctgattcacagccaaaagagtcctttaagaggtttg |
164 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||| | ||||| ||||||||||| ||||||| |||||| ||||| |||| |||| |||| ||||| |
|
|
| T |
6389718 |
ttgtcaacacatgtttctgatgagcaatacattggacacagaatcgaaggtgatctttggacttacgattcagagccagtagaggccttcaagaagtttg |
6389619 |
T |
|
| Q |
165 |
gaaataagttggctgaaattgagcaaaaactcattcaaaggaacaatgatga |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
6389618 |
gaaagaagttggctgaaattgagcaaaagctcattgaaaggaacaacgatga |
6389567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 6408958 - 6408816
Alignment:
| Q |
74 |
catgcttctgatgagcaataccttggagagagaattgaaggtgatctctggacttctgattcacagccaaaagagtcctttaagaggtttggaaataagt |
173 |
Q |
| |
|
|||| |||||||||||||||| ||||| | ||||| ||||||||||| ||||||| |||||| ||||| |||| |||| |||| ||||||||| |||| |
|
|
| T |
6408958 |
catgtttctgatgagcaatacattggacacagaatcgaaggtgatctttggacttacgattcagagccagtagaggccttcaagaagtttggaaagaagt |
6408859 |
T |
|
| Q |
174 |
tggctgaaattgagcaaaaactcattcaaaggaacaatgatga |
216 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
6408858 |
tggctgaaattgagcaaaagctcattgaaaggaacaacgatga |
6408816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 217
Target Start/End: Complemental strand, 6368717 - 6368584
Alignment:
| Q |
84 |
atgagcaataccttggagagagaattgaaggtgatctctggacttctgattcacagccaaaagagtcctttaagaggtttggaaataagttggctgaaat |
183 |
Q |
| |
|
||||| ||||||||||| | |||| |||||||||||| |||||||||||| || ||||| ||| ||| || | ||||| ||| || ||| |||||| |
|
|
| T |
6368717 |
atgaggaataccttggacaaagaactgaaggtgatctttggacttctgatccaaagccagtagaagcctacaaaaagtttgcaaagaaattgattgaaat |
6368618 |
T |
|
| Q |
184 |
tgagcaaaaactcattcaaaggaacaatgatgag |
217 |
Q |
| |
|
|||| || | ||||||||||||||||| ||||| |
|
|
| T |
6368617 |
tgaggaagagttcattcaaaggaacaataatgag |
6368584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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