View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_91 (Length: 250)
Name: NF2748_low_91
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_91 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 4303198 - 4302974
Alignment:
| Q |
26 |
attgaatataacgagtttgttagatcttatgggagaaacctcaatttattagtgccttctaagggttccaattgaattagttgttatatcttcattttct |
125 |
Q |
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| T |
4303198 |
attgaatataacgagtttgttagatcttatgggagaaacctcaatttattagtgccttctaagggttccaattgaattagttgttatatcttcattttct |
4303099 |
T |
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| Q |
126 |
aagtattgagaaagtatgcccaacctggaatataaaaaagacaatccataaaagctgctggaagttataaactcagtacacaacaatgaatatttaataa |
225 |
Q |
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| T |
4303098 |
aagtattgagaaagtatgcccaacctggaatataaaaaagacaatccataaaagctgctggaagttataaactcagtacacaacaatgaatatttaataa |
4302999 |
T |
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| Q |
226 |
tataaaagtcgcggcatgttctaac |
250 |
Q |
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| T |
4302998 |
tataaaagtcgcggcatgttctaac |
4302974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 4567789 - 4567657
Alignment:
| Q |
9 |
gaagaatattatcatatattgaatataacgagtttgttagatcttatgggagaaacctcaatttattagtgccttctaagggttccaattgaattagttg |
108 |
Q |
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||||| ||||||||||||||||||||| | ||| |||||| | |||||||||| | |||||| ||||||| ||||||| |||||| || |||| ||||| |
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| T |
4567789 |
gaagagtattatcatatattgaatatagctagtatgttaggttttatgggagataactcaatctattagttccttctaggggttcatatagaatgagttg |
4567690 |
T |
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| Q |
109 |
ttatatcttcattttctaagtattgagaaagta |
141 |
Q |
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| T |
4567689 |
ttatatcttcattttcttagtattcagaaagta |
4567657 |
T |
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