View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_92 (Length: 250)
Name: NF2748_low_92
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28297771 - 28298023
Alignment:
| Q |
1 |
cttctctcaaactaaccaatatcttgggcaaacggggattgatcccatagattggcaactataatatctattgtagagttcaagtgcacttttgagcctg |
100 |
Q |
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| T |
28297771 |
cttctctcaaactaaccaatatcttgtgcaaacggggattgatcccatagattggcaactataatatctattgtagagttcaagtgcacttttgagcctg |
28297870 |
T |
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| Q |
101 |
ttttccttgatgcataaatggttctgtagattccaaatcaccaagaaaagtggtgcttttggcctgatgtgttgtaaccttgtatattt----------- |
189 |
Q |
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| T |
28297871 |
ttttccttgatgcataaatggttctgtagattccaaatcaccaagaaaagtggtgcttttggcctgatgtgttgtaacctcgtatattttgtagtactga |
28297970 |
T |
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| Q |
190 |
----taccatatactagtgtatactggtagcacttttgcataatgatgttctc |
238 |
Q |
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| T |
28297971 |
ccactaccatatactactgtatactggtggcacttttgcataatgatgttctc |
28298023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28283078 - 28283203
Alignment:
| Q |
1 |
cttctctcaaactaaccaatatcttgggcaaacggggattgatcccatagattggcaactataatatctattgtagagttcaagtgcacttttgagcctg |
100 |
Q |
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| T |
28283078 |
cttctctaaaactaaccaatatctggagcaaaatgggattggtcccatagattggaaattttaat-tttcatgtagagttcaagtgcttttttgagcatg |
28283176 |
T |
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| Q |
101 |
ttttccttgatgcataaatggttctgt |
127 |
Q |
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| T |
28283177 |
ttttccttgatgtataaatggttctgt |
28283203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 19251359 - 19251453
Alignment:
| Q |
28 |
gcaaacggggattgatcccatagattggcaactataatatctattgtagagttcaagtgcacttttgagcctgttttccttgatgcataaatggtt |
123 |
Q |
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| T |
19251359 |
gcaaagggggattggtcccatagtttggcaactataatctatat-gtagagttcaagtacattttttagcctgttttccttgatgcatagatggtt |
19251453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28290722 - 28290786
Alignment:
| Q |
1 |
cttctctcaaactaaccaatatcttgggcaaacggggattgatcccatagattggcaactataat |
65 |
Q |
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| T |
28290722 |
cttctctaaaactaaccaacttctggagcaaaaggggtttgatcccatagattggcaactataat |
28290786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28304930 - 28304994
Alignment:
| Q |
1 |
cttctctcaaactaaccaatatcttgggcaaacggggattgatcccatagattggcaactataat |
65 |
Q |
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||||||||| |||||| ||||||| | ||||| ||| |||| ||||||||||||||||||||||| |
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| T |
28304930 |
cttctctcagactaacaaatatctggagcaaatgggcattggtcccatagattggcaactataat |
28304994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 29557926 - 29557823
Alignment:
| Q |
45 |
ccatagattggcaactataatatctattgtagagttcaagtgcacttttgagcctgttttccttgatgcataaatggttctgtagattccaaatc-acca |
143 |
Q |
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||||||||| ||||||||||| | || ||||||||||||| | |||| |||||||||||||||||||||| ||| |||||| ||||| ||||| |||| |
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| T |
29557926 |
ccatagattagcaactataat-ttta-tgtagagttcaag-ggtttttttagcctgttttccttgatgcatagatgattctgtggattctaaatctacca |
29557830 |
T |
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| Q |
144 |
agaaaag |
150 |
Q |
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||||||| |
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| T |
29557829 |
agaaaag |
29557823 |
T |
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