View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_93 (Length: 250)
Name: NF2748_low_93
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_93 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 47242177 - 47241943
Alignment:
| Q |
16 |
ctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaattctaaaaaacaataatatttcaaggtacttaatgttgc |
115 |
Q |
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| T |
47242177 |
ctccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaattctaaaaaacaataatatttcaaggtacttaatgttgc |
47242078 |
T |
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| Q |
116 |
gaatctatttcagacttcatccctatgtgaatgtttgggttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaaga |
215 |
Q |
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| T |
47242077 |
gaatctatttcagacttcatccctatgtgaatgtctgggttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaaga |
47241978 |
T |
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| Q |
216 |
agggcagcatccttcaaagctgttagggagaaata |
250 |
Q |
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| T |
47241977 |
agggcagcatccttcaaagctgttagggagaaata |
47241943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 47248621 - 47248403
Alignment:
| Q |
17 |
tccggcctggagtacatccttgggtaaatatttgatgttattgattttaatctatttgaat-tctaaaaaacaataatatttcaaggtacttaatgttgc |
115 |
Q |
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| T |
47248621 |
tccggcctggagcacatccttgggtaaatacttgttgttatggacattgatttatttgattatctagag-----taatatttcaaagtacctaatgttca |
47248527 |
T |
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| Q |
116 |
gaatctatttcagacttcatccctatgtgaatgtttgggttacaagtcggctgaattggaagaatgtgttatgattttacatgacttgtatttgtcaaga |
215 |
Q |
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| T |
47248526 |
gaatctattgcagactccttccctgtgtgaatgcttgggttacacatcggctaatttagaagattgtgttatcattttacatgatttgtatatgtcaaga |
47248427 |
T |
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| Q |
216 |
agggcagcatccttcaaagctgtt |
239 |
Q |
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| T |
47248426 |
aaggcaggatccttcaaagctgtt |
47248403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 250
Target Start/End: Complemental strand, 47253350 - 47253193
Alignment:
| Q |
93 |
tatttcaaggtacttaatgttgcgaatctatttcagacttcatccctatgtgaatgtttgggttacaagtcggctgaattggaagaatgtgttatgattt |
192 |
Q |
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| T |
47253350 |
tatttcaatgcatttaatgttgagaatctattgcagacctcatctttgagtgaatgcttgttttacaaatctgctgagttggaggaatgtgttctgattt |
47253251 |
T |
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| Q |
193 |
tacatgacttgtatttgtcaagaagggcagcatccttcaaagctgttagggagaaata |
250 |
Q |
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| T |
47253250 |
tgcatgatttgtatttggtaagaagggctgcatcattgaaagctgttagggagaaata |
47253193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 47253431 - 47253396
Alignment:
| Q |
22 |
cctggagtacatccttgggtaaatatttgatgttat |
57 |
Q |
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| T |
47253431 |
cctggagtacatcctttggtaaatatttgatgttat |
47253396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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