View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2748_low_95 (Length: 248)
Name: NF2748_low_95
Description: NF2748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2748_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13968200 - 13968439
Alignment:
| Q |
1 |
tccttattcacttggacctacgtaatacggtagnnnnnnnnctgcggtcatggatttggatcaaagttaaagtttagtactcatatgtagctttgttcaa |
100 |
Q |
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| T |
13968200 |
tccttattcacttggacctatgtaatccggtagttttttttctgcggtcatggatttggatcaaagttaaagtttagtactcatatgtaactttgttcaa |
13968299 |
T |
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| Q |
101 |
aaacaccatgagtgtatatataagatttttctcaattaatactaatccaattgacatggttgatggtcctgcaaagaccaaattcactggtagcctcaat |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
13968300 |
aaacaccatgagtgtatatataagatttttttcaattaatagtaatccaattgacatggttgatggtcctgcaaagaccaaattcaccggtagcctccat |
13968399 |
T |
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| Q |
201 |
tatgttgatggtctcctaccttacaacacagcaacctttg |
240 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
13968400 |
tatgctgatggtctcctaccttacaacacagcaacctttg |
13968439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 238
Target Start/End: Original strand, 13959551 - 13959628
Alignment:
| Q |
161 |
tgatggtcctgcaaagaccaaattcactggtagcctcaattatgttgatggtctcctaccttacaacacagcaacctt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
13959551 |
tgatggtcctgcaaagaccaaattcactggtagcctcaattatgcggatggtctcctaccttacaacactgcaacctt |
13959628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 13978286 - 13978415
Alignment:
| Q |
1 |
tccttattcacttggacctacgtaatacggtagnnnnnnnnctgcggtcatggatttggatcaaagttaaagtttagtactcatatgtagctttgttcaa |
100 |
Q |
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|||||||||||||||||||| ||||| ||| || ||| |||||||||||| |||||||||||||||||||||||||||| || |||||||||| |
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| T |
13978286 |
tccttattcacttggacctatgtaatccggcagcttttttcctgtggtcatggatttagatcaaagttaaagtttagtactcatatataactttgttcaa |
13978385 |
T |
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| Q |
101 |
aaacaccatgagtgtatatataagattttt |
130 |
Q |
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||||||||||||||||| || |||||||| |
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| T |
13978386 |
caacaccatgagtgtatacatgagattttt |
13978415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 13967123 - 13967173
Alignment:
| Q |
162 |
gatggtcctgcaaagaccaaattcactggtagcctcaattatgttgatggt |
212 |
Q |
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||||||||| | |||||||||||||||||||||||||| |||| ||||||| |
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| T |
13967123 |
gatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggt |
13967173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 13977291 - 13977341
Alignment:
| Q |
162 |
gatggtcctgcaaagaccaaattcactggtagcctcaattatgttgatggt |
212 |
Q |
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||||||||| | |||||||||||||||||||||||||| |||| ||||||| |
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| T |
13977291 |
gatggtcctaccaagaccaaattcactggtagcctcaactatgctgatggt |
13977341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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