View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_high_1 (Length: 1130)
Name: NF2749_high_1
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_high_1 |
 | |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 998; Significance: 0; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 998; E-Value: 0
Query Start/End: Original strand, 17 - 1121
Target Start/End: Complemental strand, 55750 - 54644
Alignment:
| Q |
17 |
agatctatcagttcttcactacttaggtgtgttatgtggatcttgcttatattaatgaattttcagatgaagattgtttccatgttctttggtctatcat |
116 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55750 |
agatcgatcagttcttcactacttaggtgtgttatgtggatcttgcttatattaatgaattttcagatgaagattgtttccatgttctttggtctatcat |
55651 |
T |
|
| Q |
117 |
atttctcacgtgtcttaaaattcatccttatttattcaaaagtgtcttgctatggagtttctttttcatggaaccaaaaattgaattgaaaagggaaaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
55650 |
atttctcacgtgtcttaaaattcatccttatttattcaaaagtgtcttgctatggagtttctttttcatggaaccaaaaaatgaattgaaaagggcaaca |
55551 |
T |
|
| Q |
217 |
tttaatgcattaataaccaagtgtgtatttggttgacatatcaacttcaaatatttatttggtccctcaaatgtatgnnnnnnngcaactacaaaccaaa |
316 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
55550 |
tttaatgcattaataaccaagtatgtatttggttggcatatcgacttcaaatatttatttggtccctcaaatgtatgtttttttgcaactacaaaccaaa |
55451 |
T |
|
| Q |
317 |
cacacttaaaa-gagttgcactttttaatggatactttcatccttgaacaattaactctatttagttcccttgaaggatattggatccttacctatgaag |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55450 |
cacacttaaaaagagttgcactttttaatggatactttcatccttgaacaattaactctatttagttcccttgaaggatattggatccttacctatgaag |
55351 |
T |
|
| Q |
416 |
catgggcacatacacaaatattaaacacaatagtgagtagtgactgaaatgattgaatgtaaccatgtgt-ggtgtcgtgttggatggacatgtcttcag |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
55350 |
catgggcacatacacaaatattaaacacaatagtgagtagtgactgaaatgattgaatgtaaccatgtgttggtgtcgtgttggatggacatgtcttcag |
55251 |
T |
|
| Q |
515 |
tctgaagtgttagtgctacaaaatatgatctttcttatttttcttagcatttcttttgttgtttagtgtatttgaaactctcattttctgataaagccat |
614 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55250 |
tctgaagtgtcagtgctacaaaatatgatctttcttatttttcttagcatttcttttgttgtttagtgtatttgaaactctcattttctgataaagccat |
55151 |
T |
|
| Q |
615 |
taatgattgtggtctattgcagttaatttggtgaaaaatcctggctttgaagagggtccattcccaattttcaattcaaccaacggcgttttactcccac |
714 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
55150 |
taatgatcatggtctattgcagttaatttggtgaaaaatcctagctttgaagagggtccattcccaattttcaactcaaccaacggcgttttactcccac |
55051 |
T |
|
| Q |
715 |
cacaacaagaagatctctactcaccacttcctggttggattgttgagtctctcaaagccgtgaaatttatcgactcaaagcatttcaacgtaccattcgg |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
55050 |
cacaacaagaagatctctactcaccacttcctggttggattgttgagtctctcaaagccgtgaaatttatcgactcaaagcatttcaacgtcccattcgg |
54951 |
T |
|
| Q |
815 |
acttggagcagttgagcttgttgccggcagagaaagcgccattgcacaaattctcagaacagaagctaacaaagtatacaagatcacattctcagtcgga |
914 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
54950 |
acttggagcagttgagcttgttgccggcagagaaagcgccattgcacaaattctcagaacagaagctaacaaagtctacaagatcacattctcagtcgga |
54851 |
T |
|
| Q |
915 |
gacgcgaaaaatggctgtcacggatctatgatggttgaagcttttgctgcaaaagatacgtttaaagttccctttaaatccgaagggaagggtaaattca |
1014 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54850 |
gacgcgaaaaatggctgtcacggatctatgatggttgaagcttttgctgcaaaagatacatttaaagttccctttaaatccgaagggaagggtaaattca |
54751 |
T |
|
| Q |
1015 |
taaccgcgagtttcaagtttaaagctatcgcaccaaggactagactcacattctacagctcttactatcatacaagaatcgatgattatggctctctctg |
1114 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
54750 |
taaccgtgagtttcaagtttaaagctatcgcaccaaggactagactcacattctacagctctttctatcatacaagaatcgatgattatggttctctctg |
54651 |
T |
|
| Q |
1115 |
tgctcct |
1121 |
Q |
| |
|
|| |||| |
|
|
| T |
54650 |
tggtcct |
54644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 631 - 1105
Target Start/End: Original strand, 14130337 - 14130811
Alignment:
| Q |
631 |
ttgcagttaatttggtgaaaaatcctggctttgaagagggtccattcccaattttcaattcaaccaacggcgttttactcccaccacaacaagaagatct |
730 |
Q |
| |
|
|||||| |||||| || | ||| ||||||||||| ||||||||||||||||||||||| |||||||| || || |||| || ||| ||||| ||||||| |
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|
| T |
14130337 |
ttgcagctaatttagtaagaaaccctggctttgaggagggtccattcccaattttcaactcaaccaatggtgtcatacttcctccaaaacaacaagatct |
14130436 |
T |
|
| Q |
731 |
ctactcaccacttcctggttggattgttgagtctctcaaagccgtgaaatttatcgactcaaagcatttcaacgtaccattcggacttggagcagttgag |
830 |
Q |
| |
|
|| ||||| |||||||||||| |||| || ||||||||| | ||||| || || ||||| |||||| | || ||||| ||| |||||||| ||| |
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|
| T |
14130437 |
tgtgtctccactccctggttggattattgaatccctcaaagccattaaattcattgattcaaaccatttccaagtgccatttggaaaaggagcagtggag |
14130536 |
T |
|
| Q |
831 |
cttgttgccggcagagaaagcgccattgcacaaattctcagaacagaagctaacaaagtatacaagatcacattctcagtcggagacgcgaaaaatggct |
930 |
Q |
| |
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|||||||| || || ||||| ||||||||||||||||| ||||||| | |||||||| ||||| | | |||| |||| ||||| | | |||||| | |
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|
| T |
14130537 |
cttgttgcaggtagggaaagtgccattgcacaaattctaagaacagttacaaacaaagtctacaacttgaaattcacagttggagatggaagaaatggtt |
14130636 |
T |
|
| Q |
931 |
gtcacggatctatgatggttgaagcttttgctgcaaaagatacgtttaaagttccctttaaatccgaagggaagggtaaattcataaccgcgagtttcaa |
1030 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| ||| || |||||||||| |||||||| | || ||||| | ||||| ||| || | |||||| |
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|
| T |
14130637 |
gtcatggatcaatgatggttgaagcttttgctgcaagagagactcttaaagttccttttaaatctgttggaaagggaatattcaaaacagcaaatttcaa |
14130736 |
T |
|
| Q |
1031 |
gtttaaagctatcgcaccaaggactagactcacattctacagctcttactatcatacaagaatcgatgattatgg |
1105 |
Q |
| |
|
|| ||||| | || || || ||| |||||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
14130737 |
cttcaaagcagtttcaaatagaacaagaatcacattctacagctctttctatcatacaaaaattgatgattatgg |
14130811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 631 - 1100
Target Start/End: Original strand, 14113841 - 14114310
Alignment:
| Q |
631 |
ttgcagttaatttggtgaaaaatcctggctttgaagagggtccattcccaattttcaattcaaccaacggcgttttactcccaccacaacaagaagatct |
730 |
Q |
| |
|
|||||| ||||||||| | ||| |||||||||||||| ||||||||||| |||||||| |||| || || ||| |||| || ||| | ||| ||||||| |
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|
| T |
14113841 |
ttgcagataatttggtaagaaaccctggctttgaagaaggtccattccctattttcaacacaacaaatggtgttctacttcctccaaagcaacaagatct |
14113940 |
T |
|
| Q |
731 |
ctactcaccacttcctggttggattgttgagtctctcaaagccgtgaaatttatcgactcaaagcatttcaacgtaccattcggacttggagcagttgag |
830 |
Q |
| |
|
|||||||| ||||| |||||| |||| || ||||||||| | ||||| || || |||||| ||||| | |||||||| ||| ||||||||| ||| |
|
|
| T |
14113941 |
tgtgtcaccactccctggctggattattgaatccctcaaagccattaaattcattgattcaaagaatttccaagtaccatttggaaatggagcagtggag |
14114040 |
T |
|
| Q |
831 |
cttgttgccggcagagaaagcgccattgcacaaattctcagaacagaagctaacaaagtatacaagatcacattctcagtcggagacgcgaaaaatggct |
930 |
Q |
| |
|
|||||||| || || ||||| || |||||||||||||| ||||||| | |||||||| ||||| | | |||| || | ||||| | | |||||| | |
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|
| T |
14114041 |
cttgttgcaggtagggaaagtgctattgcacaaattctaagaacagttccaaacaaagtctacaatttgaaattcacaattggagatggaagaaatggtt |
14114140 |
T |
|
| Q |
931 |
gtcacggatctatgatggttgaagcttttgctgcaaaagatacgtttaaagttccctttaaatccgaagggaagggtaaattcataaccgcgagtttcaa |
1030 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| || |||||||||| || ||||| ||| ||||| | ||||| ||| || |||||||| |
|
|
| T |
14114141 |
gtcatggatcaatgatggttgaagcatttgctgcaaaagagactcttaaagttcctttcaaatctttaggaaagggaacattcaaaacagcaagtttcaa |
14114240 |
T |
|
| Q |
1031 |
gtttaaagctatcgcaccaaggactagactcacattctacagctcttactatcatacaagaatcgatgat |
1100 |
Q |
| |
|
|| ||||| || | |||||| |||||||||||||||||| |||||||||||| || |||||| |
|
|
| T |
14114241 |
cttcaaagcagattcagacacaactagaatcacattctacagctctttctatcatacaaggattgatgat |
14114310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 631 - 994
Target Start/End: Original strand, 14126626 - 14126989
Alignment:
| Q |
631 |
ttgcagttaatttggtgaaaaatcctggctttgaagagggtccattcccaattttcaattcaaccaacggcgttttactcccaccacaacaagaagatct |
730 |
Q |
| |
|
|||||| ||||||||| || || || |||||||||||||||||||||| |||||||| ||||||| || || |||| || ||| ||||| ||||||| |
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|
| T |
14126626 |
ttgcagctaatttggtaaagaaccccagctttgaagagggtccattccctattttcaacacaaccaatggggtcatacttcctccaaaacaacaagatct |
14126725 |
T |
|
| Q |
731 |
ctactcaccacttcctggttggattgttgagtctctcaaagccgtgaaatttatcgactcaaagcatttcaacgtaccattcggacttggagcagttgag |
830 |
Q |
| |
|
|| || || || ||||||||| |||| |||||||||||| | ||||| || || |||||||||||| | |||||||| ||| ||||||||| ||| |
|
|
| T |
14126726 |
tgtatctcccctcccgggttggattattgaatctctcaaagccattaaattcattgattcaaagcatttccaagtaccatttggaaatggagcagtggag |
14126825 |
T |
|
| Q |
831 |
cttgttgccggcagagaaagcgccattgcacaaattctcagaacagaagctaacaaagtatacaagatcacattctcagtcggagacgcgaaaaatggct |
930 |
Q |
| |
|
|||||||| || || ||||| || |||||||||||| | ||||||| | |||||||| ||||| | | |||| || | ||||| || | ||||| | |
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| T |
14126826 |
cttgttgcaggaagggaaagtgcaattgcacaaattttgagaacagttacaaacaaagtttacaacttgaaattcacaattggagatgcaaggaatggat |
14126925 |
T |
|
| Q |
931 |
gtcacggatctatgatggttgaagcttttgctgcaaaagatacgtttaaagttccctttaaatc |
994 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||| ||| || |||||||||| |||||||| |
|
|
| T |
14126926 |
gtcatggatcaatgatggttgaagcatttgctgcaagagagactcttaaagttccatttaaatc |
14126989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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