View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2749_high_10 (Length: 586)
Name: NF2749_high_10
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_high_10 |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 163 - 576
Target Start/End: Complemental strand, 7464000 - 7463585
Alignment:
| Q |
163 |
atttaacccctgattatttgtaaatattcaatataaaataaatggttggaagtnnnnnnnnt-caagaaagtttggttatcatatttgaaaatcaaaatg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| |
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|
| T |
7464000 |
atttaacccctgattatttgtaaatattccatataaaataaatggttggaagtaaaaaaaattcaaggaagtttggttatcatatttgaaaatcaaaatg |
7463901 |
T |
|
| Q |
262 |
taacttctttcctttacaacctttttgtcattaacctttattccattacaacctttcgttacaattttcccatccatcattttttcccagcactaccatt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7463900 |
taacttctttcctttacaacctttttgtcattgacctttattccattacaacctttcgttacaattttcccatccatcattttttcccagcactaccatt |
7463801 |
T |
|
| Q |
362 |
tcttttcattgatattcttaaccttcccattaattttaaagccacgcttggtcacttaaattggaaatttcaacatgaaatga-gggtaccacttacact |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7463800 |
tcttttcattgatattcttaaccttcccattaattttaaagtcacgcttggtcacttaaattggaaatttcaacatgaaatgaggggtaccacttacact |
7463701 |
T |
|
| Q |
461 |
aattcattccctgattgttataattgtttgtacatatctttatttattttatcatttccttctaattcaagttgattgtctgtatttgaatcactctctc |
560 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7463700 |
aattcattccctgattcttataattgtttgtacatatctttatttattttatcatttccttctaattcaagttgattgtctgtatttgaatcactctctc |
7463601 |
T |
|
| Q |
561 |
catctttcatctcact |
576 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
7463600 |
catctttcatctcact |
7463585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 163 - 390
Target Start/End: Complemental strand, 23094895 - 23094666
Alignment:
| Q |
163 |
atttaacccctgattatttgtaaatattcaatataaaataaatggttggaagtnnnnnnnn--tcaagaaagtttggttatcatatttgaaaatcaaaat |
260 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||| |
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|
| T |
23094895 |
atttaaacccttattatttgtaaatattccatataaaataaatggttggaagtaaaaaaatattcaaggaagtttgattatcatatttgaaaataaaaat |
23094796 |
T |
|
| Q |
261 |
gtaacttctttcctttacaacctttttgtcattaacctttattccattacaacctttcgttacaattttcccatccatcattttttcccagcactaccat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
23094795 |
gtaacttctttcctttacaacctttttgtcattgacctttattcgattacaacctttcattacaattttcccttccaccattttttcccagcactaccat |
23094696 |
T |
|
| Q |
361 |
ttcttttcattgatattcttaaccttccca |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
23094695 |
ttcttttcattgatattcttaaccttccca |
23094666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 7466792 - 7466678
Alignment:
| Q |
22 |
caggcccagcccaccaacctcagcactacatcttgatctggaatctggaatggtagtggaaaaccctagccgcagaagggaaatagaagaagggtgaaga |
121 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
7466792 |
caggcccagcccaccaaccttagcactacatcttgatctagaatctggaatggtagtggaaaaccttagccgcataagggaaatagaagaagggtgaaga |
7466693 |
T |
|
| Q |
122 |
aaaccctaataagaa |
136 |
Q |
| |
|
||||||||||||||| |
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|
| T |
7466692 |
aaaccctaataagaa |
7466678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 8849748 - 8849649
Alignment:
| Q |
234 |
ttggttatcatatttgaaaatcaaaatgtaacttctttcctttacaacctttttgtc-attaacctttattccattacaacctttcgttacaattttccc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||| |
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|
| T |
8849748 |
ttggttatcatatttgaaaatcaaaatgtaacttctttcctttacaacctttttgtcaattgacctttattccattacaacctttctttacgattttccc |
8849649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 170 - 576
Target Start/End: Original strand, 5195 - 5607
Alignment:
| Q |
170 |
ccctgattatttgtaaatattcaatataaaataaatggttggaagtnnnnnnnn----tcaagaaagtttggttatcatatttgaaaatcaaaatgtaac |
265 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
5195 |
ccctgattatttgtaaatattccatataaaataaacgtttggaagtaaaaaaaaaaattcaaggaagtttggttatcatatttgaaaatcaaaatgtaac |
5294 |
T |
|
| Q |
266 |
ttctttcctttacaacctttttgtcattaacctttattccattacaacctttcgttacaattttcccatccatcattttttcccag-cactaccatttct |
364 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||| |||| |||||||||| || ||||||||||||| |
|
|
| T |
5295 |
ttctttccattacaacctttttgtcattgacctttgttccattacaacctttcattacagttttcccttccaccattttttccaaggcactaccatttct |
5394 |
T |
|
| Q |
365 |
tttcattgatattcttaaccttcccattaattttaaagccacgcttggtcacttaaattggaaatttcaacatgaaatgaggg-taccacttacactaat |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
5395 |
tttcattgatattcttaaccttcccattaattttaaagtcacgtttggtcacttaaattggaaatttcaacatgaattgaggggtaccacttacactaat |
5494 |
T |
|
| Q |
464 |
tcattccctgattgttataattgtttgtacatatctttatttattttatcatttccttctaattcaagttgattgtctgtatttgaatcactctctccat |
563 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5495 |
tcattccctgattcttataattgtttgtacatatctttatttattttatcatttccttttaattcaagttgattgtttgtatttgaatcactctctccat |
5594 |
T |
|
| Q |
564 |
ctttcatctcact |
576 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5595 |
atttcatctcact |
5607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 163 - 576
Target Start/End: Complemental strand, 21126566 - 21126144
Alignment:
| Q |
163 |
atttaacccctgattatttgtaaatattcaatataaaataaatggttggaagtnnnnnnnn--tcaagaaagtttggttatcatatttgaaaatcaaaat |
260 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
21126566 |
attttacccctgattatttgtaaatattccatataaaataaacggttggaagtaaaaaaaaaatcaacgatgtttggttatcatatttgaaaatcaaaat |
21126467 |
T |
|
| Q |
261 |
gtaacttctttcctttacaacctttttgtcattaacctttattccattacaacctttcgttacaattttcccatccatca-ttttttccca-gcactacc |
358 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||||| |||||||| |
|
|
| T |
21126466 |
gtaacttcttttctttacaatctttttgtcattgacctttattccattacaacctttcgttacaattttcccttccaccatttttttcccaggcactacc |
21126367 |
T |
|
| Q |
359 |
atttcttttcattgatattcttaaccttcccattaattttaaagccacgcttggtcacttaaattggaaatttcaacatgaaatga-gggtaccacttac |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21126366 |
atttcttttcattgatattcttaaccttcccattaattttaaagtcacgcttggtcacttaaattggaaatttcaacatgaaatgaggggtaccacttac |
21126267 |
T |
|
| Q |
458 |
actaattcattccctgattgttataattgtt----tgtacatatctttatttattttatcatttccttctaattcaagttgattgtctgtatttgaatca |
553 |
Q |
| |
|
||||||||||||| ||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21126266 |
actaattcattccttgattcttataattcttttcattgacatatctttatttattttatcatttccttctaattcaagttgattgtctgtatttgaatca |
21126167 |
T |
|
| Q |
554 |
ctctctccatctttcatctcact |
576 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21126166 |
ctctctccatctttcatctcact |
21126144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 238 - 400
Target Start/End: Complemental strand, 1970396 - 1970234
Alignment:
| Q |
238 |
ttatcatatttgaaaatcaaaatgtaacttctttcctttacaacctttttgtcattaacctttattccattacaacctttcgttacaattttcccatcca |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | || | |
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|
| T |
1970396 |
ttatcatatttgaaaatcaaaatgtaacttctttcctttacaacctttttgtcattgacctttattccattacaacctttctttacaattttctcttcta |
1970297 |
T |
|
| Q |
338 |
tcattttttcccagcactaccatttcttttcattgatattcttaaccttcccattaattttaa |
400 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
1970296 |
ccatattttccgcgcactaccatttcttttcattgatatttttaatcttcccattaattttaa |
1970234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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