View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2749_high_29 (Length: 402)
Name: NF2749_high_29
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 28 - 392
Target Start/End: Original strand, 10955150 - 10955514
Alignment:
| Q |
28 |
gaaatggaagtgtgattcttcatttcctttgccatggctcatattatcacttcataatttatttttatg-acagggatgtgagcgatcttggacacatga |
126 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||| ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
10955150 |
gaaatggaagtgggattcttaatttcctttgccatggctcatattaaca-ttcataattaatttttatggacagggatgtcagcgatcttggacacatga |
10955248 |
T |
|
| Q |
127 |
cgacttctcagattggcatacattgatgttaatagtgggcatccgttaatgttcaatagcttaagagaggagggaaattcatctcttggcaataaaccaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10955249 |
cgacttctcagattggcatacattgatgttaatagcgggcatccgttaatgttcaatagcttaagagaggagggaaattcatctcttggcaataaaccaa |
10955348 |
T |
|
| Q |
227 |
gtcttggacaatcatcaaatttcaatgattccaaagaggaaggcaacatgtctggcaaggacataagttctgtggacaagttacaaatacaagtgatttc |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10955349 |
gtcttggacaatcatcaaatttcaatgattccaaagaggaaggcaacatgtctggcaaggacataagttctgtggacaagttacaaatacaagtgatttc |
10955448 |
T |
|
| Q |
327 |
ggaaaagaaggcaacatggcttgaaaagactcgagccctgagcacatttccttctaagtatttcat |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10955449 |
ggaaaagaaggcaacatggcttgaaaagactcgagccctgagcacatttccttctaagtatttcat |
10955514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 10944858 - 10945058
Alignment:
| Q |
12 |
aagaaaaaatgtacctgaaatggaagtgtgattcttcatttcctttgccatggctcatattatcacttcataatttatttttatgacagggatgtgagcg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10944858 |
aagaaaaaatgtacctgaaatggaagtgtgattcttcatttcctttgccatggctcatattatcacttcataatttatttttatgacaggcatgtgagcg |
10944957 |
T |
|
| Q |
112 |
atcttggacacatgacgacttctcagattggcatacattgatgttaatagtgggcatccgttaatgttcaatagcttaagagaggagggaaattcatctc |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10944958 |
atcttggacacatgacgacttctccgattggcatatcttgctgttaatag-cggcttccattaatgttcaatagcttaagagagaagggaaattcatctc |
10945056 |
T |
|
| Q |
212 |
tt |
213 |
Q |
| |
|
|| |
|
|
| T |
10945057 |
tt |
10945058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 51 - 337
Target Start/End: Complemental strand, 13398734 - 13398450
Alignment:
| Q |
51 |
ttcctttgccatggctcatattatcacttcataatttatttttatgacagggatgtgagcgatcttggacacatgacgacttctcagattggcatacatt |
150 |
Q |
| |
|
||||||| | |||||||||||| ||||| | ||||||||||| |||||||||||||| ||||||||||| |||| | ||||| | |||||||| || |
|
|
| T |
13398734 |
ttcctttccgatggctcatattgtcactataccatttatttttacgacagggatgtgagagatcttggacaaatgatcatttctcttagtggcatacctt |
13398635 |
T |
|
| Q |
151 |
gatgttaatagtgggcatccgttaatgttcaatagcttaagagaggagggaaattcatctcttggcaataaaccaagtcttggacaatcatcaaatttca |
250 |
Q |
| |
|
||| |||| || || || | ||||| ||| || |||||||||||| ||||| || ||||||| ||| ||||||||||||||||||||||||| || |
|
|
| T |
13398634 |
gattttaacagcggacagtggctaatgctcagtaacttaagagaggaaggaaacccagaccttggcagtaacccaagtcttggacaatcatcaaattcca |
13398535 |
T |
|
| Q |
251 |
atgattccaaagaggaaggcaacatgtctggcaaggacataagttctgtggacaagttacaaatacaagtgatttcggaaaagaagg |
337 |
Q |
| |
|
|| ||||||||||||||| ||||| || ||||| ||||||||| | ||||||| ||| ||| |||||||||||| |||||||||| |
|
|
| T |
13398534 |
gtgtttccaaagaggaaggaaacatatccggcaacgacataagt--tttggacaatttataaagacaagtgatttcagaaaagaagg |
13398450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 11778890 - 11778926
Alignment:
| Q |
84 |
atttatttttatgacagggatgtgagcgatcttggac |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
11778890 |
atttatttctatgacagggatgtgagcgattttggac |
11778926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 828951 - 828854
Alignment:
| Q |
241 |
tcaaatttcaatgattccaaagaggaaggcaacatgtctggcaaggacataagttctgtggacaagttacaaatacaagtgatttcggaaaagaaggcaa |
340 |
Q |
| |
|
|||||||||| || ||||||||||||||||| | || |||||| ||| | ||||||| ||||| | ||| ||||||||||||| ||||||||||||| |
|
|
| T |
828951 |
tcaaatttcagtgtttccaaagaggaaggcagcctgaatggcaatgacttgagttctg--gacaatcttcaactacaagtgatttcagaaaagaaggcaa |
828854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University