View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_high_35 (Length: 303)
Name: NF2749_high_35
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 12032845 - 12032969
Alignment:
| Q |
15 |
caaaggccattgagaatcataaaacggtgtgttggaaaatgaagaatttgttgcatatgatatgtagtagtagacattccatacgtcgaagagacaaaaa |
114 |
Q |
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| T |
12032845 |
caaaggccattgagaatcataaaacggtgtgtttgaaaatgaagaatttgttgcatatgatatgtagtagtagacattccatacgtcgaagagacgaaga |
12032944 |
T |
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| Q |
115 |
ctatataaacacatattcatatcct |
139 |
Q |
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| T |
12032945 |
ctatataaacacatattcatatcct |
12032969 |
T |
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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 12033013 - 12033114
Alignment:
| Q |
184 |
gacatgtatcatatgataatgttgaaagacttgtaaatgtattcaaaaggtggtaagttgcgtatttctgggattatatcgatcttgacgtccttgattg |
283 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| |
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| T |
12033013 |
gacacgtatcatatgataatgttgaaggacttgtaaatgtattcaaaaggtggtaagttgcgtatttttggaattatattgatcttgacgtccttgattg |
12033112 |
T |
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| Q |
284 |
tt |
285 |
Q |
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|| |
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| T |
12033113 |
tt |
12033114 |
T |
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