View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_high_37 (Length: 301)
Name: NF2749_high_37
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 16843626 - 16843352
Alignment:
| Q |
10 |
aagaatatacagaaatatttcacaaaggaagcaaacggtcagtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacagggttag |
109 |
Q |
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| T |
16843626 |
aagaatatacagaaatatttcacaaaggaagcaaacggtcagtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacagggttag |
16843527 |
T |
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| Q |
110 |
aaaatctaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttatcg |
209 |
Q |
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| T |
16843526 |
aaaatccaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttatcg |
16843427 |
T |
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| Q |
210 |
tttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttg |
284 |
Q |
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| T |
16843426 |
tttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttg |
16843352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 24210891 - 24210618
Alignment:
| Q |
11 |
agaatatacagaaatatttcacaaaggaagcaaacggtcagtgactataatcaaggaggactttagggtcaagctatttttcaaaataaacagggttaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
24210891 |
agaatatacagaaatatttcacaaaggaagcaaaaggtcagtgactgtaatcaagtaggactctagggtcaagctattcttcaaaataaacagggttaga |
24210792 |
T |
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| Q |
111 |
aaatctaagaccatttacaaaatgtcataggtttatgatattcataattttatctgctttgtccatagtgaccatttaacagcttctaagaacttatcgt |
210 |
Q |
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||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24210791 |
aaatccaagaccgtttacaaaatgccataggtttatgatattcataattttatctgcttcatccatagtgaccatttaacagcttctaagaacttatcgt |
24210692 |
T |
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| Q |
211 |
ttcgcttcagtgcattgataagattagtgtaggttgtctcgtcaagttctattccattttttctcatttccttg |
284 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
24210691 |
ttcgcttcagtgcattgataagattggtgtaggttgtctggtcaggttctattccattttttctcatttccttg |
24210618 |
T |
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