View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_high_38 (Length: 298)

Name: NF2749_high_38
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_high_38
NF2749_high_38
[»] chr6 (7 HSPs)
chr6 (1-279)||(33575833-33576111)
chr6 (195-269)||(33568841-33568915)
chr6 (183-245)||(19746857-19746919)
chr6 (16-137)||(5978705-5978826)
chr6 (15-59)||(33568661-33568705)
chr6 (197-269)||(34862010-34862082)
chr6 (29-75)||(19747033-19747079)
[»] chr3 (3 HSPs)
chr3 (1-269)||(36339778-36340046)
chr3 (182-258)||(25901429-25901505)
chr3 (182-258)||(25915447-25915523)
[»] scaffold0707 (2 HSPs)
scaffold0707 (195-269)||(5235-5309)
scaffold0707 (15-59)||(5055-5099)
[»] chr1 (2 HSPs)
chr1 (3-53)||(17954036-17954086)
chr1 (15-62)||(39379422-39379469)
[»] chr7 (7 HSPs)
chr7 (183-232)||(26237459-26237508)
chr7 (3-53)||(24035416-24035466)
chr7 (14-72)||(26237278-26237336)
chr7 (195-232)||(24016646-24016683)
chr7 (14-59)||(26229881-26229926)
chr7 (183-232)||(26256620-26256669)
chr7 (15-59)||(24391079-24391123)
[»] chr2 (1 HSPs)
chr2 (185-233)||(25376921-25376969)
[»] chr4 (2 HSPs)
chr4 (15-63)||(3557388-3557436)
chr4 (182-258)||(10571426-10571502)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 33575833 - 33576111
Alignment:
Q  1 agaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgta 100  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||    
T  33575833 agaagcaaggttaaagttttcaattcgggtgataattgttggagaaatattcgaagtttccctttcgttcctattttgggaaatgatggtgttcatttta 33575932  T
Q  101 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33575933 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 33576032  T
Q  201 tgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgccttatgataag 279  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33576033 tgtttcgcttgatcttttgacagagacatacacacaatttttgcttcctacgggttttaaggagctgccttatgataag 33576111  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 33568841 - 33568915
Alignment:
Q  195 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 269  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  33568841 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgcc 33568915  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 19746919 - 19746857
Alignment:
Q  183 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgct 245  Q
    ||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  19746919 tgttgagcaatttgtgattgtttcccttgatctttcgactgagacatacacacaatttttgct 19746857  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 5978705 - 5978826
Alignment:
Q  16 gttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgtagtggaactattaact 115  Q
    ||||||| ||||||||||  |||||||||| | ||||||||||| ||||| |||||| || | || |||||||||||  |||  ||||||||  |||| |    
T  5978705 gttttcagtttgggtgatttttgttggagagagattcaaagttttcctttggttcctcttatcgggaatgatggtgtgcatttgagtggaacggttaatt 5978804  T
Q  116 ggttagctattcacagtgacta 137  Q
    || ||||||||||| |||||||    
T  5978805 ggctagctattcacggtgacta 5978826  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 33568661 - 33568705
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  33568661 agttttcagtttgggtgatagttgttggagaaatattcaaagttt 33568705  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 34862082 - 34862010
Alignment:
Q  197 tgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 269  Q
    |||||| ||||||||||||||| || |||||||||| | | || |||||||| ||||||||||| ||| ||||    
T  34862082 tgattgcttcgcttgatctttccaccgagacatacaaatatttgttgcttcccaagggttttaaagagttgcc 34862010  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 19747079 - 19747033
Alignment:
Q  29 gtgataattgttggagaaatattcaaagtttccctttcgttcctatt 75  Q
    ||||||||||||||||||||||| | |||||||||||  ||||||||    
T  19747079 gtgataattgttggagaaatattgagagtttccctttgattcctatt 19747033  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 36339778 - 36340046
Alignment:
Q  1 agaagcaaggtttaagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcctattttgggaaatgatggtgtatattgta 100  Q
    |||||||||||   |||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||| || |  | |||||||||||  |||  |    
T  36339778 agaagcaaggtggcagtttttagttttggtgataattgttggagatatattcaaagtttccctttggttcctcttatatggaatgatggtgtgcatttga 36339877  T
Q  101 gtggaactattaactggttagctattcacagtgactacgcaccaattgaggttggaggaacatttaaaactcttattggtcctgttgagaaatgtgtgat 200  Q
    ||||| ||||||||||||| ||| ||    | |||| || | |||||||   ||||| ||||  |||| ||  ||||  || ||||||| |||  |||||    
T  36339878 gtggagctattaactggttggctctttctggcgacttcgtatcaattgattgtggagaaacaagtaaagcttatattcctcttgttgagcaattggtgat 36339977  T
Q  201 tgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 269  Q
    ||||||||||||||||||||| ||||||||||  || ||||||||||||   |||||||||||| ||||    
T  36339978 tgtttcgcttgatctttcgacggagacatacaggcagtttttgcttcctgcaggttttaaggaggtgcc 36340046  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 25901505 - 25901429
Alignment:
Q  182 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 258  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25901505 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggtttt 25901429  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 25915523 - 25915447
Alignment:
Q  182 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 258  Q
    |||||||| ||| ||||||||||||||||||||| || || ||| ||||||| || || ||||| |||  |||||||    
T  25915523 ctgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggtttt 25915447  T

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Target: scaffold0707 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 5235 - 5309
Alignment:
Q  195 tgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggttttaaggagctgcc 269  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5235 tgtgattgtttcccttgatctttcgccggagacatacacacaatttttgcttcctaagggttttaatgaggtgcc 5309  T

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Target: scaffold0707; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 5055 - 5099
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  5055 agttttcagtttgggtgatagttgttggagaaatattcaaagttt 5099  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 17954086 - 17954036
Alignment:
Q  3 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 53  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||||||||    
T  17954086 aagcgaggttaaagtttacagtttgggtgataattgttggagaaatattca 17954036  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 39379469 - 39379422
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagtttccc 62  Q
    |||||||| |||||||||||||  ||||||||||||| ||||||||||    
T  39379469 agttttcagtttgggtgataatgtttggagaaatattgaaagtttccc 39379422  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 26237459 - 26237508
Alignment:
Q  183 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||| ||| ||||||| |||||||||||||||||||| |||||||||    
T  26237459 tgttgagcaatttgtgattctttcgcttgatctttcgacaaagacataca 26237508  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 24035416 - 24035466
Alignment:
Q  3 aagcaaggtttaagttttcaatttgggtgataattgttggagaaatattca 53  Q
    ||||| |||| || |||||||| | ||||||||||||||||||||||||||    
T  24035416 aagcagggttaaaattttcaatcttggtgataattgttggagaaatattca 24035466  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 26237278 - 26237336
Alignment:
Q  14 aagttttcaatttgggtgataattgttggagaaatattcaaagtttccctttcgttcct 72  Q
    ||||||| | |||||||| ||| ||||||||||||||||||||||| ||  ||||||||    
T  26237278 aagtttttagtttgggtgttaactgttggagaaatattcaaagttttccggtcgttcct 26237336  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 232
Target Start/End: Original strand, 24016646 - 24016683
Alignment:
Q  195 tgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  24016646 tgtgattgtttctcttgatctttcgacggagacataca 24016683  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 26229881 - 26229926
Alignment:
Q  14 aagttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  26229881 aagtttttagtttgggtggtaactgttggagaaatattcaaagttt 26229926  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 26256620 - 26256669
Alignment:
Q  183 tgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacataca 232  Q
    ||||||| ||| ||||||| |||||||||||||||| || ||||||||||    
T  26256620 tgttgagcaatttgtgattatttcgcttgatctttcaacggagacataca 26256669  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 24391079 - 24391123
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagttt 59  Q
    |||||| | |||||||||||||  |||||||||||||||||||||    
T  24391079 agtttttagtttgggtgataatatttggagaaatattcaaagttt 24391123  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 25376921 - 25376969
Alignment:
Q  185 ttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacac 233  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||||||    
T  25376921 ttgagaaatatgtgattgtttcgctcgatctctcgactgagacatacac 25376969  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 3557388 - 3557436
Alignment:
Q  15 agttttcaatttgggtgataattgttggagaaatattcaaagtttccct 63  Q
    |||||||| ||| |||||||||  ||||||||||||| |||||||||||    
T  3557388 agttttcagtttaggtgataatgtttggagaaatattgaaagtttccct 3557436  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 10571502 - 10571426
Alignment:
Q  182 ctgttgagaaatgtgtgattgtttcgcttgatctttcgacagagacatacacacaatttttgcttcctaagggtttt 258  Q
    |||||||| ||| |||||||||||| |||||||| || || ||| |||||||  |||| |||||||||  |||||||    
T  10571502 ctgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggtttt 10571426  T

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