View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_high_41 (Length: 259)
Name: NF2749_high_41
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 44248652 - 44248878
Alignment:
| Q |
18 |
acaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccactttgcatcagagcctaagtggtgaacaggtttaggttttgaag |
117 |
Q |
| |
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|||||||| |||||||||||| |||||||||||| |||| ||||||||| |||||| || |||||||||||| ||||| ||| ||||||| |||| |
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| T |
44248652 |
acaagaaaaggtgaccaataggctgtcaagtttgcgttgtaagaaggaaagtaccaccttccatcagagcctatatggtggacacgtttagggcttgata |
44248751 |
T |
|
| Q |
118 |
cagaagataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtgtaagaaaagtgtt |
217 |
Q |
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||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
44248752 |
cagtggataataagcaaataagggactctatttggttatttgctaaagagtctccaacaaaagctatgttcatgtttttgatgagtttaagaaaagtgtt |
44248851 |
T |
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| Q |
218 |
tggttcaaaaattggaagatcacactc |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44248852 |
tggttcaaaaattggaagatcacactc |
44248878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 119 - 249
Target Start/End: Complemental strand, 15274612 - 15274482
Alignment:
| Q |
119 |
agaagataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtgtaagaaaagtgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15274612 |
agaagataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtgtaagaaaagtgttt |
15274513 |
T |
|
| Q |
219 |
ggttcaaaaattggaagatcacactcctttg |
249 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
15274512 |
ggttcaaaaattggaagatcacactcctttg |
15274482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 15283908 - 15283805
Alignment:
| Q |
18 |
acaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccactttgcatcagagcctaagtggtgaacaggtttaggttttgaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
15283908 |
acaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccactttgcatcagagcctaaatggtggacaggtttaggttttgaag |
15283809 |
T |
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| Q |
118 |
caga |
121 |
Q |
| |
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|||| |
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| T |
15283808 |
caga |
15283805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 15262344 - 15262202
Alignment:
| Q |
93 |
tggtgaacaggtttaggttttgaagcagaagataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgt |
192 |
Q |
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||||| |||||||||||||||||| ||| ||||| | ||||| ||| ||||| | |||||| ||||||||||| ||||||||||||| ||||| ||| |
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| T |
15262344 |
tggtggacaggtttaggttttgaaacagttgataacatgcaaagaagagactcaaattggtttctagctaaagaatctccaacaaaagatatgtgtctgt |
15262245 |
T |
|
| Q |
193 |
tgttgatgagtgtaagaaaagtgtttggttcaaaaattggaag |
235 |
Q |
| |
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| ||| | ||| |||||||||||||||||||| ||||||| |
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| T |
15262244 |
ttttgcttagttggagaaaagtgtttggttcaaaccttggaag |
15262202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 244
Target Start/End: Original strand, 15288097 - 15288236
Alignment:
| Q |
105 |
ttaggttttgaagcagaagataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtg |
204 |
Q |
| |
|
|||||| |||||| || ||||| | ||||| ||| ||||||| |||||||||||| ||||| ||||||||||||||||| | |||| || ||||| |
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|
| T |
15288097 |
ttaggtgttgaagtagtcgataacatgcaaagaagtgactctaattggttcctagccaaagaatctccaacaaaagctatatgtttgttcttaatgagat |
15288196 |
T |
|
| Q |
205 |
taagaaaagtgtttggttcaaaaattggaagatcacactc |
244 |
Q |
| |
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| || ||||||||||||||||| |||| |||| |||||| |
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| T |
15288197 |
tgaggaaagtgtttggttcaaaccttggtagattacactc |
15288236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 15265972 - 15266026
Alignment:
| Q |
132 |
caaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgt |
186 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||| || ||||||||||| |||| |
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|
| T |
15265972 |
caaagaagagactctaattggttcctagctaaagaatcaccaacaaaagcaatgt |
15266026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 11807570 - 11807801
Alignment:
| Q |
18 |
acaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccactttgcatcagagcctaagtggtgaacaggtttaggttttgaag |
117 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| | || |||||||| || | | | ||||||||||||| |
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| T |
11807570 |
acaagaaatggtgcccaataggatgtcaagtttgcattgtaagaaggaaaataccacctcccaatagagcctatatgattgatatatttaggttttgaaa |
11807669 |
T |
|
| Q |
118 |
cagaagataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtgtaagaaaagtgtt |
217 |
Q |
| |
|
||| ||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||| |
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| T |
11807670 |
cagtggataataagcaaataagggactctagttggttcctagataaagagtctccaacaaaaactatgttcatgttgctcatgagtttaagaaaagtgtt |
11807769 |
T |
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| Q |
218 |
tggttcaaaaattggaagatcacactcctttg |
249 |
Q |
| |
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||| ||||||||||||||||||||||| |||| |
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| T |
11807770 |
tgggtcaaaaattggaagatcacactcatttg |
11807801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 51383096 - 51382873
Alignment:
| Q |
18 |
acaagaaatggtgaccaatagaatgtcaagtttgcattgtgagaaggaaaataccactttgcatcagagcctaagtggtgaacaggtttaggttttgaag |
117 |
Q |
| |
|
|||||||| || |||||||| || | |||||||||||||||||||||||| ||||||||| | ||||||| ||| | ||| ||||||||||||||| |
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| T |
51383096 |
acaagaaaaggcgaccaataaaaagacaagtttgcattgtgagaaggaaagtaccactttcta---gagcctagatggcggacacgtttaggttttgaag |
51383000 |
T |
|
| Q |
118 |
cagaagataataagcaaacaagggactctatttggttcctagctaaagagtctccaacaaaagctatgttcatgttgttgatgagtgtaagaaaagtgtt |
217 |
Q |
| |
|
||| ||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||| ||||||| ||||| |
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| T |
51382999 |
cagtggataataagcatataagggactcaatttggttcctagataaagagtctccaacaaaagctatatgcatgttgttgatgagtttaagaaatgtgtt |
51382900 |
T |
|
| Q |
218 |
tggttcaaaaattggaagatcacactc |
244 |
Q |
| |
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|||||||||| ||| ||||| |||||| |
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|
| T |
51382899 |
tggttcaaaatttgaaagatgacactc |
51382873 |
T |
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