View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_high_6 (Length: 650)

Name: NF2749_high_6
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_high_6
NF2749_high_6
[»] chr6 (36 HSPs)
chr6 (1-384)||(26661218-26661601)
chr6 (1-384)||(26767189-26767572)
chr6 (491-637)||(26660966-26661112)
chr6 (491-637)||(26766937-26767083)
chr6 (1-181)||(21593138-21593318)
chr6 (8-181)||(3809232-3809402)
chr6 (52-181)||(22964080-22964209)
chr6 (52-181)||(23824184-23824313)
chr6 (52-173)||(24435566-24435687)
chr6 (52-181)||(31979899-31980028)
chr6 (52-173)||(18234465-18234587)
chr6 (88-181)||(603622-603715)
chr6 (92-181)||(9183399-9183488)
chr6 (56-193)||(26954656-26954792)
chr6 (52-175)||(10076783-10076906)
chr6 (52-130)||(31086110-31086189)
chr6 (52-130)||(5017133-5017211)
chr6 (88-181)||(5571850-5571943)
chr6 (114-181)||(17759427-17759494)
chr6 (52-177)||(33211534-33211658)
chr6 (54-130)||(16452679-16452756)
chr6 (54-130)||(16452790-16452867)
chr6 (52-181)||(21272575-21272704)
chr6 (54-159)||(5406548-5406655)
chr6 (54-159)||(5410873-5410980)
chr6 (52-159)||(30834884-30834994)
chr6 (54-181)||(5411583-5411712)
chr6 (67-159)||(5413812-5413905)
chr6 (295-343)||(27533467-27533515)
chr6 (295-343)||(27726419-27726467)
chr6 (54-129)||(31405024-31405100)
chr6 (92-181)||(5407297-5407387)
chr6 (52-170)||(24714754-24714872)
chr6 (52-159)||(33160702-33160811)
chr6 (1-69)||(17762571-17762639)
chr6 (218-262)||(21593058-21593102)
[»] chr4 (47 HSPs)
chr4 (1-175)||(50674362-50674536)
chr4 (1-181)||(6655428-6655608)
chr4 (52-181)||(34570763-34570892)
chr4 (1-181)||(26363737-26363917)
chr4 (1-181)||(27417467-27417647)
chr4 (59-181)||(9927817-9927939)
chr4 (1-181)||(40630456-40630636)
chr4 (3-181)||(41639037-41639215)
chr4 (52-177)||(37740320-37740445)
chr4 (52-181)||(36314816-36314945)
chr4 (52-181)||(36329025-36329154)
chr4 (87-181)||(54882512-54882606)
chr4 (52-181)||(5429370-5429499)
chr4 (52-159)||(54200255-54200362)
chr4 (52-181)||(8689082-8689211)
chr4 (52-181)||(25861618-25861748)
chr4 (53-181)||(5268785-5268914)
chr4 (52-181)||(54867561-54867690)
chr4 (8-171)||(50263221-50263383)
chr4 (53-181)||(5143644-5143772)
chr4 (52-181)||(6743001-6743130)
chr4 (74-181)||(12745787-12745895)
chr4 (52-130)||(16622931-16623008)
chr4 (107-181)||(35661911-35661985)
chr4 (167-256)||(8653111-8653200)
chr4 (167-256)||(8664918-8665007)
chr4 (154-229)||(10071403-10071477)
chr4 (74-181)||(46570115-46570222)
chr4 (56-181)||(5148064-5148189)
chr4 (52-130)||(16628510-16628587)
chr4 (100-181)||(52095757-52095839)
chr4 (1-65)||(54882608-54882672)
chr4 (52-159)||(29254206-29254313)
chr4 (66-181)||(36994250-36994365)
chr4 (107-181)||(26176028-26176102)
chr4 (1-181)||(2209192-2209360)
chr4 (107-181)||(56179028-56179103)
chr4 (52-186)||(3909782-3909915)
chr4 (88-181)||(3777966-3778060)
chr4 (54-130)||(52083007-52083084)
chr4 (54-130)||(52094014-52094091)
chr4 (107-181)||(5370479-5370554)
chr4 (88-131)||(5396327-5396370)
chr4 (93-180)||(24968801-24968888)
chr4 (218-263)||(26363656-26363701)
chr4 (107-178)||(12739942-12740014)
chr4 (107-178)||(12748148-12748220)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-181)||(11030-11210)
[»] scaffold0014 (1 HSPs)
scaffold0014 (7-181)||(80805-80979)
[»] chr8 (28 HSPs)
chr8 (52-181)||(30143032-30143161)
chr8 (1-181)||(42435507-42435687)
chr8 (52-181)||(4731348-4731477)
chr8 (55-181)||(15212476-15212602)
chr8 (52-181)||(43036113-43036242)
chr8 (1-181)||(22976006-22976186)
chr8 (74-181)||(27810988-27811095)
chr8 (1-159)||(4283040-4283198)
chr8 (52-181)||(12702987-12703117)
chr8 (74-181)||(4733515-4733622)
chr8 (74-181)||(40221236-40221343)
chr8 (52-181)||(5702065-5702195)
chr8 (52-181)||(1345718-1345848)
chr8 (52-181)||(1746566-1746697)
chr8 (74-180)||(11383479-11383585)
chr8 (54-181)||(34256854-34256983)
chr8 (58-181)||(4743548-4743672)
chr8 (54-181)||(19175318-19175445)
chr8 (52-128)||(33351893-33351969)
chr8 (54-179)||(34254678-34254805)
chr8 (52-132)||(23799211-23799291)
chr8 (217-263)||(4731267-4731313)
chr8 (100-181)||(42497904-42497986)
chr8 (88-132)||(4696263-4696307)
chr8 (73-181)||(10014849-10014957)
chr8 (52-180)||(31217947-31218077)
chr8 (52-159)||(17982364-17982473)
chr8 (52-159)||(19948669-19948778)
[»] chr3 (55 HSPs)
chr3 (1-181)||(4569423-4569603)
chr3 (5-181)||(43404253-43404429)
chr3 (1-181)||(55302481-55302660)
chr3 (1-181)||(36018334-36018502)
chr3 (12-180)||(6096127-6096295)
chr3 (52-181)||(29812753-29812882)
chr3 (36-181)||(54593176-54593321)
chr3 (5-181)||(43402310-43402486)
chr3 (1-181)||(31340557-31340739)
chr3 (3-181)||(40912809-40912987)
chr3 (52-181)||(5236806-5236935)
chr3 (52-181)||(40592357-40592486)
chr3 (52-181)||(29810558-29810687)
chr3 (147-256)||(30235616-30235724)
chr3 (52-181)||(8127012-8127141)
chr3 (88-181)||(44331259-44331352)
chr3 (52-176)||(1735884-1736008)
chr3 (52-143)||(24694779-24694870)
chr3 (74-181)||(34490704-34490811)
chr3 (74-181)||(49200040-49200147)
chr3 (52-181)||(8370064-8370193)
chr3 (68-181)||(46173206-46173318)
chr3 (54-173)||(40845037-40845157)
chr3 (53-181)||(48438598-48438727)
chr3 (52-181)||(16264731-16264860)
chr3 (52-181)||(36029475-36029605)
chr3 (52-181)||(39032130-39032259)
chr3 (52-130)||(47923530-47923608)
chr3 (54-181)||(7761954-7762082)
chr3 (52-181)||(44331796-44331925)
chr3 (52-130)||(30709423-30709501)
chr3 (54-181)||(7764141-7764270)
chr3 (52-181)||(5258492-5258623)
chr3 (52-181)||(9636476-9636607)
chr3 (52-181)||(27027088-27027218)
chr3 (52-181)||(40735117-40735248)
chr3 (169-256)||(47303763-47303850)
chr3 (54-132)||(23410681-23410759)
chr3 (88-176)||(27038459-27038548)
chr3 (72-181)||(21711603-21711713)
chr3 (52-130)||(40734239-40734317)
chr3 (54-181)||(45094853-45094982)
chr3 (1-61)||(49199987-49200047)
chr3 (94-181)||(16498756-16498840)
chr3 (52-129)||(25929023-25929100)
chr3 (218-263)||(31340775-31340820)
chr3 (217-263)||(34490623-34490669)
chr3 (53-131)||(37726058-37726135)
chr3 (217-263)||(44331177-44331223)
chr3 (52-98)||(51398587-51398633)
chr3 (136-181)||(3393296-3393341)
chr3 (94-131)||(37408199-37408236)
chr3 (107-180)||(51398517-51398590)
chr3 (94-130)||(27974579-27974615)
chr3 (88-132)||(35925908-35925952)
[»] chr7 (43 HSPs)
chr7 (1-180)||(6360428-6360607)
chr7 (52-181)||(47674292-47674421)
chr7 (52-181)||(47676485-47676614)
chr7 (52-181)||(27347614-27347742)
chr7 (52-181)||(2647283-2647412)
chr7 (52-181)||(14070182-14070312)
chr7 (52-181)||(14380210-14380340)
chr7 (52-181)||(4585851-4585980)
chr7 (36-181)||(32358387-32358532)
chr7 (52-176)||(18126339-18126463)
chr7 (52-180)||(26417004-26417132)
chr7 (52-159)||(2761651-2761758)
chr7 (52-181)||(48489120-48489249)
chr7 (52-181)||(4538900-4539029)
chr7 (74-181)||(2389764-2389871)
chr7 (52-159)||(48491290-48491397)
chr7 (52-132)||(21983625-21983704)
chr7 (52-176)||(33332041-33332165)
chr7 (52-191)||(496343-496481)
chr7 (52-181)||(23554729-23554860)
chr7 (88-181)||(43863951-43864044)
chr7 (52-152)||(46515923-46516023)
chr7 (52-181)||(49092071-49092203)
chr7 (52-159)||(1113368-1113475)
chr7 (52-181)||(4796255-4796384)
chr7 (54-181)||(19495659-19495789)
chr7 (52-180)||(6570284-6570412)
chr7 (52-181)||(4178464-4178595)
chr7 (94-181)||(30026391-30026477)
chr7 (1-84)||(48599840-48599923)
chr7 (53-131)||(2479719-2479796)
chr7 (53-131)||(44847762-44847839)
chr7 (53-131)||(47264026-47264103)
chr7 (55-181)||(79773-79902)
chr7 (52-132)||(21989290-21989369)
chr7 (8-98)||(29608296-29608386)
chr7 (52-98)||(31733311-31733357)
chr7 (107-173)||(31733354-31733420)
chr7 (221-263)||(48491208-48491250)
chr7 (54-130)||(24515110-24515187)
chr7 (218-263)||(34311334-34311379)
chr7 (1-69)||(2361487-2361555)
chr7 (52-84)||(30025081-30025113)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-132)||(6848-6980)
[»] chr1 (35 HSPs)
chr1 (1-181)||(37033585-37033765)
chr1 (1-151)||(13547605-13547754)
chr1 (1-151)||(13549516-13549665)
chr1 (1-179)||(193086-193264)
chr1 (52-181)||(44454849-44454978)
chr1 (52-181)||(31658928-31659057)
chr1 (52-181)||(28220575-28220705)
chr1 (52-181)||(49918039-49918168)
chr1 (52-159)||(30476797-30476904)
chr1 (52-173)||(13598782-13598904)
chr1 (52-181)||(28223770-28223900)
chr1 (52-180)||(1833212-1833341)
chr1 (52-181)||(10924913-10925042)
chr1 (167-267)||(42298542-42298642)
chr1 (74-181)||(37879480-37879587)
chr1 (52-181)||(4552997-4553126)
chr1 (74-159)||(29135762-29135847)
chr1 (102-186)||(3156552-3156636)
chr1 (74-181)||(11348191-11348298)
chr1 (60-181)||(37070157-37070279)
chr1 (54-181)||(3206675-3206805)
chr1 (52-181)||(3282089-3282218)
chr1 (52-130)||(29652195-29652273)
chr1 (52-132)||(21536206-21536285)
chr1 (54-181)||(20762361-20762490)
chr1 (1-61)||(37879427-37879487)
chr1 (92-181)||(3189040-3189131)
chr1 (92-181)||(3197857-3197948)
chr1 (53-131)||(13604259-13604336)
chr1 (52-159)||(13316666-13316775)
chr1 (94-181)||(13659694-13659778)
chr1 (54-130)||(15820048-15820124)
chr1 (92-180)||(22819852-22819940)
chr1 (53-132)||(16455385-16455464)
chr1 (99-132)||(16124295-16124328)
[»] chr5 (27 HSPs)
chr5 (17-159)||(27015026-27015168)
chr5 (52-181)||(42426584-42426713)
chr5 (36-181)||(5057521-5057666)
chr5 (52-181)||(13487895-13488022)
chr5 (52-181)||(32636513-32636643)
chr5 (52-159)||(19806118-19806225)
chr5 (52-179)||(16650971-16651098)
chr5 (1-123)||(38746535-38746657)
chr5 (52-181)||(11916557-11916687)
chr5 (74-159)||(535615-535700)
chr5 (88-159)||(39468917-39468988)
chr5 (52-181)||(13239442-13239572)
chr5 (52-173)||(14520612-14520733)
chr5 (95-181)||(40146739-40146825)
chr5 (53-181)||(31004739-31004868)
chr5 (52-132)||(12083813-12083892)
chr5 (107-181)||(42428822-42428896)
chr5 (112-181)||(38746460-38746529)
chr5 (52-124)||(16649972-16650044)
chr5 (107-181)||(30683312-30683386)
chr5 (92-181)||(37438835-37438925)
chr5 (54-159)||(25412473-25412580)
chr5 (52-98)||(533542-533588)
chr5 (52-159)||(13342772-13342881)
chr5 (52-130)||(30182329-30182409)
chr5 (53-131)||(9352971-9353048)
chr5 (94-131)||(36931986-36932023)
[»] chr2 (31 HSPs)
chr2 (1-177)||(35447400-35447575)
chr2 (52-181)||(2837193-2837322)
chr2 (52-181)||(34389233-34389362)
chr2 (52-181)||(36318358-36318488)
chr2 (52-181)||(20522604-20522733)
chr2 (52-176)||(14698600-14698724)
chr2 (52-181)||(21630327-21630456)
chr2 (147-261)||(1632300-1632413)
chr2 (53-181)||(33528209-33528338)
chr2 (52-176)||(10706843-10706967)
chr2 (88-176)||(17865595-17865684)
chr2 (52-181)||(36988423-36988554)
chr2 (52-181)||(45099444-45099575)
chr2 (52-181)||(39483258-39483388)
chr2 (52-176)||(23078062-23078186)
chr2 (52-181)||(33118517-33118646)
chr2 (54-159)||(5723604-5723711)
chr2 (52-181)||(8389733-8389864)
chr2 (107-181)||(39284587-39284661)
chr2 (54-159)||(2334767-2334874)
chr2 (107-181)||(29867569-29867644)
chr2 (52-130)||(36206013-36206092)
chr2 (53-131)||(28258814-28258891)
chr2 (52-159)||(4503480-4503589)
chr2 (169-229)||(17629022-17629082)
chr2 (115-181)||(6595406-6595473)
chr2 (1-76)||(45726507-45726582)
chr2 (52-130)||(13569712-13569789)
chr2 (52-81)||(7450877-7450906)
chr2 (218-263)||(45726415-45726460)
chr2 (52-84)||(39284672-39284704)
[»] scaffold0066 (1 HSPs)
scaffold0066 (52-179)||(20764-20891)
[»] scaffold0006 (4 HSPs)
scaffold0006 (52-173)||(6067-6189)
scaffold0006 (53-181)||(2876-3005)
scaffold0006 (53-131)||(132916-132993)
scaffold0006 (94-181)||(149455-149539)
[»] scaffold0176 (1 HSPs)
scaffold0176 (74-181)||(17635-17742)
[»] scaffold0087 (2 HSPs)
scaffold0087 (53-186)||(36413-36546)
scaffold0087 (53-131)||(43598-43675)
[»] scaffold0016 (1 HSPs)
scaffold0016 (92-179)||(114278-114365)
[»] scaffold0002 (1 HSPs)
scaffold0002 (52-181)||(434221-434353)
[»] scaffold0349 (1 HSPs)
scaffold0349 (295-343)||(4998-5046)
[»] scaffold0098 (1 HSPs)
scaffold0098 (53-131)||(45582-45659)
[»] scaffold0140 (1 HSPs)
scaffold0140 (94-131)||(8054-8091)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 26661601 - 26661218
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |    
T  26661601 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcataatcatgtcacgttttcccaaatcgtgacaatgttggtgcgtacga 26661502  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaac 200  Q
    |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661501 cccaaggtacgaccaaccttatcctgaaaacgagtccagcaagtcgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaac 26661402  T
Q  201 catgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgtac 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661401 catgcattcaacatcagatatcgtgacacggatgtcaaatcgtgtcatgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgtac 26661302  T
Q  301 atccaaaggttccaaggacttcactttccatcacaaaccaaaaacggacagaaaattcgaatatttataatagctttttagact 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26661301 atccaaaggttccaaggacttcactttccatcacaaaccaaaaaccgacagaaaattcgaatatttataatagctttttagact 26661218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 26767572 - 26767189
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |    
T  26767572 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcataatcatgtcacgttttcccaaatcgtgacaatgttggtgcgtacga 26767473  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaac 200  Q
    |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26767472 cccaaggtacgaccaaccttatcctgaaaacgagtccagcaagtcgaaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaac 26767373  T
Q  201 catgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgtac 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26767372 catgcattcaacatcagatatcgtgacacggatgtcaaatcgtgtcatgattcttcgctttcttaaatcaccaaattttgagtcatccataacaatgtac 26767273  T
Q  301 atccaaaggttccaaggacttcactttccatcacaaaccaaaaacggacagaaaattcgaatatttataatagctttttagact 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26767272 atccaaaggttccaaggacttcactttccatcacaaaccaaaaaccgacagaaaattcgaatatttataatagctttttagact 26767189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 491 - 637
Target Start/End: Complemental strand, 26661112 - 26660966
Alignment:
Q  491 cataataacatttatatatacgacggtacaatttcatggtgtatgatcaataaacttgaagggagtaaatgttatatatctaacacttccttctcccttt 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26661112 cataataacatttatatatacgacggtacaatttcatggtgtatgatcaataaacttgaagggagtaaatgttatatatccaacacttccttctcccttt 26661013  T
Q  591 tctataactgttgtgtggaccagtcacaataattgtaccaccacttt 637  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  26661012 tctatagctgttgtgtggaccagtcacaataattgtaccaccacttt 26660966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 491 - 637
Target Start/End: Complemental strand, 26767083 - 26766937
Alignment:
Q  491 cataataacatttatatatacgacggtacaatttcatggtgtatgatcaataaacttgaagggagtaaatgttatatatctaacacttccttctcccttt 590  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26767083 cataataacatttatatatacgacggtacaatttcatggtgtatgatcaataaacttgaagggagtaaatgttatatatccaacacttccttctcccttt 26766984  T
Q  591 tctataactgttgtgtggaccagtcacaataattgtaccaccacttt 637  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  26766983 tctatagctgttgtgtggaccagtcacaataattgtaccaccacttt 26766937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 21593318 - 21593138
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||| || || ||| ||   |||||||| |||||| |||||||||||||| ||||||||||||||||||  |||||| || || |    
T  21593318 gcttacccaacaaatgggttatggagtgcttacatagtgttcatatccggacaaaatcgtgtcacattttcccaaatcgtgacacggttggtacgaacga 21593219  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||| |||||||||||||| |||||  | ||||||||||||||||| |||||| |||||||||||| ||||||||    
T  21593218 cccaaggtacgaccaaccttatcctaaaaacatgcccagcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacg 21593138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 3809232 - 3809402
Alignment:
Q  8 caacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaagg 107  Q
    |||||||| ||||| ||||||| |||   |||||||||||||| ||||||||| ||||| ||||||||||| |||||   ||||| ||||| ||||||||    
T  3809232 caacaaatgggtcaaagaatgcttataatgtgttcagatccggacaaaatcgtatcacgatttcccaaatcatgacacatttggtacgtacgacccaagg 3809331  T
Q  108 tacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| ||||||||||||||||||||   |||  ||||||||||||| |||||| ||| |||||||||||||||||    
T  3809332 tacgaccaaccttatcctgaaaac-tttcc--caagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 3809402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 22964080 - 22964209
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||| ||||||   |||| |||||| |  |||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  22964080 caaaatcgtgtcacgttttcccaaattgtgacacgtttggcgcgtacgatacaaggtacgaccaaccttatcctgaaaacttgtccagcaagccaaaaat 22964179  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| ||||||||||||||| |||||    
T  22964180 cgtgtcacgttttcccaaaatcgtatcacg 22964209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 23824313 - 23824184
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||| ||||||   |||| |||||| |  |||||||| ||||||||||||||||||||  |||||||||||| |||||    
T  23824313 caaaatcgtgtcacgttttcccaaattgtgacacgtttggcgcgtacgatacaaggtacgaccaaccttatcctgaaaacttgtccagcaagccaaaaat 23824214  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| ||||||||||||||| |||||    
T  23824213 cgtgtcacgttttcccaaaatcgtatcacg 23824184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 24435687 - 24435566
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||| |||||||||| ||  |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| | | | ||||  ||||||    
T  24435687 caaattcgtgtcacgattggccaaatcgtgacacggttggtgcgtacaacccaaggtacgaccaaccttatcctgaaaacgtgccaaacaagttgaaaat 24435588  T
Q  152 cttgtcacattttcccaaaatc 173  Q
    | |||||| |||||||||||||    
T  24435587 cgtgtcacgttttcccaaaatc 24435566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 31979899 - 31980028
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   ||||||||||| || ||| |||| ||||||||||||||||||||| | ||||||||  ||||||    
T  31979899 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgactcaaagtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaat 31979998  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
      |||||| |||| ||||||||||| ||||    
T  31979999 tgtgtcacgtttttccaaaatcgtgacacg 31980028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 18234465 - 18234587
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||  |||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   |||||    
T  18234465 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaa 18234564  T
Q  151 tcttgtcacattttcccaaaatc 173  Q
    || | |||| |||||||||||||    
T  18234565 tcgtatcacgttttcccaaaatc 18234587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 603622 - 603715
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| | ||||| ||| | ||||||||||||||||||  | ||||||||||||||||| |||||| |||||||||||||||||||||    
T  603622 ttggtgcgtacgatccaagatacgatcaaccttatcctgaaaacttgcccagcaagccgaaaatcatgtcacgttttcccaaaatcgtgtcacg 603715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 9183399 - 9183488
Alignment:
Q  92 tgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||| ||||||||||| ||||||||||||||||||||  | |||||||| | |||||| |||||| |||||||||||||||||||||    
T  9183399 tgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgcccagcaagtcaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 9183488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 26954656 - 26954792
Alignment:
Q  56 atcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttg 155  Q
    ||||||||| |||| || |||||||||||  |||| ||||||| ||||||||||| ||||||||||||||||||| | ||| |||| ||| |||||| ||    
T  26954656 atcgtgtcatgtttcccaaaatcgtgacacggttgatgcgtacgacccaaggtacgaccaaccttatcctgaaaatgtgtcaagcatgccaaaaatcgtg 26954755  T
Q  156 tcacattttcccaaaatcgtgtcacgttttgcctccag 193  Q
     ||| ||||  | ||||||||||| |||||||||||||    
T  26954756 acacgttttatc-aaatcgtgtcatgttttgcctccag 26954792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 52 - 175
Target Start/End: Complemental strand, 10076906 - 10076783
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||| |||||||||||||  |||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||    |||||||   |||||    
T  10076906 caaagtcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtaatcagcaagttaaaaat 10076807  T
Q  152 cttgtcacattttcccaaaatcgt 175  Q
    | | |||| |||||||||||||||    
T  10076806 cgtatcacgttttcccaaaatcgt 10076783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 31086189 - 31086110
Alignment:
Q  52 caaaatcgtgtcacgttttc-ccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    |||||||||||||||||||  |||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  31086189 caaaatcgtgtcacgtttttgccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaa 31086110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 5017211 - 5017133
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    |||||||||||||| ||||  ||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  5017211 caaaatcgtgtcacattttttcaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaa 5017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 5571943 - 5571850
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| ||||||||||| |||||||||| ||| |||||| | ||||||||  ||||||| |||||| ||||| |||||||||| ||||    
T  5571943 ttggtgcgtacgacccaaggtacgaccaaccttaacctaaaaacgtgcccagcaagttgaaaatcgtgtcacgttttctcaaaatcgtgacacg 5571850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 17759494 - 17759427
Alignment:
Q  114 caaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||||||||||  ||||||||||||||||||  |||||| ||| |||||||||||||||||    
T  17759494 caaccttatcctgaaaacttgtccagcaagccgaaaattgtgtcacgtttccccaaaatcgtgtcacg 17759427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 177
Target Start/End: Original strand, 33211534 - 33211658
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||| |||||  ||||||||||||  |||||||||||| |||||| |||| |  |||| |||||| |||||| | ||| |||||| |||||    
T  33211534 caaaatcgtgtcatgttttgtcaaatcgtgacatggttggtgcgtacgacccaaagtacgataaaccatatcctaaaaacgtgcccaacaagcc-aaaat 33211632  T
Q  152 cttgtcacattttcccaaaatcgtgt 177  Q
    | || ||| |||| ||||||||||||    
T  33211633 catgacacgtttttccaaaatcgtgt 33211658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 16452679 - 16452756
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||| |||||||||||||||||||    
T  16452679 aaatcgtgtcacgtttttccccaatcgtgccatgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaa 16452756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 16452790 - 16452867
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||| |||||||||||||||||||    
T  16452790 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaa 16452867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 21272704 - 21272575
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||| |||||||| ||  ||||||| |||||  |||||||||||| | ||||||||  ||||||||||||||||||||| | | | || | | |||||    
T  21272704 caaaattgtgtcacgattggccaaatcttgacacggttggtgcgtacgatccaaggtatgaccaaccttatcctgaaaacgtgccaaacatgtcaaaaat 21272605  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | || |||  || |||||||||||||||||    
T  21272604 cgtgacacgattacccaaaatcgtgtcacg 21272575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 5406548 - 5406655
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||| |||||||||||||| |||| |  | |||||||||| |||||    
T  5406548 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcctaaaaatcttgcccagcaagccaaaaat 5406647  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  5406648 cgtgtcac 5406655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 5410873 - 5410980
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||| |||||||||||||| |||| |  | |||||||||| |||||    
T  5410873 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcctaaaaatcttgcccagcaagccaaaaat 5410972  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  5410973 cgtgtcac 5410980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 30834884 - 30834994
Alignment:
Q  52 caaaatcgtgtcacgtttt--cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaa 148  Q
    |||||||||||||||||||  ||| ||||||| ||   ||| ||||||| | ||||||||| ||||||||||||||||||| |  | |||||||||| ||    
T  30834884 caaaatcgtgtcacgttttttccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaa 30834983  T
Q  149 aatcttgtcac 159  Q
    |||| ||||||    
T  30834984 aatcgtgtcac 30834994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 5411583 - 5411712
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    |||||||||||| |||| ||| ||||||| ||   ||| ||||||| ||||||||||| |||||||||||| |||||| |  | |||||||||| ||||     
T  5411583 aaatcgtgtcacatttttccccaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcttgaaaatcttgcccagcaagccaaaaaa 5411682  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
      ||||||  ||| ||||||||||||||||    
T  5411683 tgtgtcacgattttccaaaatcgtgtcacg 5411712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 5413812 - 5413905
Alignment:
Q  67 ttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcac 159  Q
    ||||||| ||||||| ||   ||| ||||||| ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||| ||||||    
T  5413812 ttttccccaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcac 5413905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 27533467 - 27533515
Alignment:
Q  295 atgtacatccaaaggttccaaggacttcactttccatcacaaaccaaaa 343  Q
    ||||||| |||||| ||||||| ||||| ||||||||||||||||||||    
T  27533467 atgtacaaccaaagattccaagtacttccctttccatcacaaaccaaaa 27533515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 27726419 - 27726467
Alignment:
Q  295 atgtacatccaaaggttccaaggacttcactttccatcacaaaccaaaa 343  Q
    ||||||| |||||| ||||||| ||||| ||||||||||||||||||||    
T  27726419 atgtacaaccaaagattccaagtacttccctttccatcacaaaccaaaa 27726467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 31405024 - 31405100
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaa 129  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||| ||||||| ||||||||||||||||||    
T  31405024 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgacctaaggtacgaccaaccttatcctgaaa 31405100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 5407297 - 5407387
Alignment:
Q  92 tgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||| ||||||||||| |||||||||||| |||||| |  | |||||||||| ||||   ||||||  ||| ||||||||||||||||    
T  5407297 tgcgtacgacccaaggtacgaccaaccttatcttgaaaatcttgcccagcaagccaaaaaatgtgtcacgattttccaaaatcgtgtcacg 5407387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 24714754 - 24714872
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||| |||||||| ||  ||| |||||||||  |||||  ||||  |||||  |||| ||||| ||||||||||||||| | ||||||||  ||||||    
T  24714754 caaaattgtgtcacgattggccatatcgtgacacggttggatcgtatgacccacagtacgaccaatcttatcctgaaaacgtgcccagcaagttgaaaat 24714853  T
Q  152 cttgtcacattttcccaaa 170  Q
    | |||||| |||| |||||    
T  24714854 cgtgtcacgtttttccaaa 24714872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 33160702 - 33160811
Alignment:
Q  52 caaaatcgtgtcacgttttccca-aatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    |||||| ||||||||||||||   ||||||| ||   ||| ||||||| |||||| |||| ||||||||||||||||||| |  | |||||||||| |||    
T  33160702 caaaattgtgtcacgttttccatcaatcgtgtcacgattgatgcgtacgacccaatgtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 33160801  T
Q  150 atcttgtcac 159  Q
    ||| ||||||    
T  33160802 atcgtgtcac 33160811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17762639 - 17762571
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttt 69  Q
    ||||||||||||||| || ||| || ||| ||   ||||||||||||||| |||||||||| |||||||    
T  17762639 gcttacccaacaaatgggccatggagtgcttacatagtgttcagatccggacaaaatcgtgacacgttt 17762571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 21593102 - 21593058
Alignment:
Q  218 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttc 262  Q
    |||||||||||||| || |||||| |||||||||||||| |||||    
T  21593102 aaatcgtgacacggttgccaaatcatgtcacgattcttcactttc 21593058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 50674362 - 50674536
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||||| |||||||||||   |||||||||||||| |||||| |||||| | |||||||||||||||||   ||||||||||| |    
T  50674362 gcttacccaacaaatgggtcaaagaatgcatatattgtgttcagatccggacaaaattgtgtcatgatttcccaaatcgtgacacgtttggtgcgtacga 50674461  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgt 175  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| |||||||||||||||    
T  50674462 cccaaggtacaaccaaccttatcctgaaaacgtgcccagcaagctgaaaatcatgtcacgttttcccaaaatcgt 50674536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 6655608 - 6655428
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||||| |||||||||||   ||||||||| |||| ||||||||||||||| |||||||||||||||||   ||||||||||| |    
T  6655608 gcttacccaacaaatgggtcaaagaatgcatatattgtgttcagaaccggacaaaatcgtgtcacgatttcccaaatcgtgacacgtttggtgcgtacga 6655509  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| |||| ||||||||||||||||||||  | ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  6655508 cccaatgtacgaccaaccttatcctgaaaacttgcccagcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacg 6655428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 34570763 - 34570892
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34570763 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgcgtacgacccaaggtacaaccaaccttatcctgaaaacttgtccagcaagccgaaaat 34570862  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||||||||    
T  34570863 cgtgtcacgttttcccaaaatcgtgtcacg 34570892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 26363917 - 26363737
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| |||||| || ||| ||   ||||||||||||||| ||||||||||||||| |||||||||| ||||||   ||||||||||| |    
T  26363917 gcttacccaacaaatgggtcatggagtgcttacatagtgttcagatccggacaaaatcgtgtcacgatttcccaaattgtgacacgtttggtgcgtacga 26363818  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||  ||||||||||||||||||||  |  |||||||||||||||| |||||| |||||||||||||||||||||    
T  26363817 cccaaggtatgaccaaccttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 26363737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 27417467 - 27417647
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| |||||| || ||| |||  |||||| |||||||| ||||||||||||||| |||||||||||||||||  |||| ||||||| |    
T  27417467 gcttacccaacaaatgggtcatggagtgcttatatagtgtttagatccggacaaaatcgtgtcacgatttcccaaatcgtgacacggttgatgcgtacga 27417566  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||| |||||||||||||||||| || | | | ||||  ||||||| |||||| |||||||||||||||||||||    
T  27417567 cccaaggtacgaccaaccttatcctgaaaccgtgccgaacaagttgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 27417647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 9927817 - 9927939
Alignment:
Q  59 gtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtca 158  Q
    ||||||||||||||||||||||||||   ||||||||||| |||||||| || ||||||||||||||||||||  ||||||||||||||||||| |||||    
T  9927817 gtgtcacgttttcccaaatcgtgacacgtttggtgcgtacgacccaaggaacgaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtca 9927916  T
Q  159 cattttcccaaaatcgtgtcacg 181  Q
    |||||||||||||||||||||||    
T  9927917 cattttcccaaaatcgtgtcacg 9927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 40630636 - 40630456
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||||| |||||||||||    ||||||||||||| ||||||||||||||| |||||||||||||||||   ||||||| ||  |    
T  40630636 gcttacccaacaaatgggtcaaagaatgcatatattatgttcagatccggacaaaatcgtgtcacgatttcccaaatcgtgacacgtttggtgcatatga 40630537  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||| ||||||||||| ||||||| | | | ||||||| ||||||| |||||| |||||||||||||||| ||||    
T  40630536 cccaaggtacgaccaaccttattctgaaaatgtgcctagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgacacg 40630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 41639215 - 41639037
Alignment:
Q  3 ttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacc 102  Q
    ||||||||||||| ||||||  | ||| ||   ||||||||||||| | ||||||||||||| | |||||||||||||||||  |||| ||||||| |||    
T  41639215 ttacccaacaaatgggtcatgaagtgcttacatagtgttcagatccagacaaaatcgtgtcatggtttcccaaatcgtgacacagttgatgcgtacgacc 41639116  T
Q  103 caaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||| ||||||||||||||||||||| | ||| ||||  ||||||| |||||| |||| ||||||||||||||||    
T  41639115 caaggtacgaccaaccttatcctgaaaacgtgcccaacaagttgaaaatcgtgtcacgtttttccaaaatcgtgtcacg 41639037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 52 - 177
Target Start/End: Complemental strand, 37740445 - 37740320
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||||||||||   |||||| |||| ||||||||||| ||||||||||||||||||||  | || |||||||||||||    
T  37740445 caaaatcgtgtcacgttttcccaaatcgtgacacatttggtgtgtacgacccaaggtacgaccaaccttatcctgaaaacttgccctgcaagccgaaaat 37740346  T
Q  152 cttgtcacattttcccaaaatcgtgt 177  Q
    | |||||| |||||||||||||||||    
T  37740345 catgtcacgttttcccaaaatcgtgt 37740320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 36314945 - 36314816
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||    
T  36314945 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaat 36314846  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||| ||||    
T  36314845 cgtgtcacgttttcccaaaatcgtgacacg 36314816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 36329154 - 36329025
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||    
T  36329154 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaat 36329055  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||| ||||    
T  36329054 cgtgtcacgttttcccaaaatcgtgacacg 36329025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 54882606 - 54882512
Alignment:
Q  87 gttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||    
T  54882606 gttggtgcgtacgacccaaggtacgatcaaccttatcctgaaaacgtgtccaacaagccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 54882512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 5429499 - 5429370
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||| ||||||||| |||||||||   ||||||||||| ||||||||||| ||||| |||| |||||||||  ||||| ||||| ||||||    
T  5429499 caaaatcgtgtcatgttttcccacatcgtgacacgattggtgcgtacgacccaaggtacgaccaatcttaacctgaaaacttgtccaacaagctgaaaat 5429400  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | | |||| |||||||||||||||||||||    
T  5429399 cgtatcacgttttcccaaaatcgtgtcacg 5429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 54200255 - 54200362
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||| ||||||||||||||||| |  ||||||||||| ||||||||||| |||||||||||| |||||||  | ||||||||||||||||    
T  54200255 caaaatcgtgtcacattttcccaaatcgtgactagtttggtgcgtacgacccaaggtacgaccaaccttatcttgaaaacttgcccagcaagccgaaaat 54200354  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  54200355 cgtgtcac 54200362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 8689211 - 8689082
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||||| |||||||| ||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   |||||    
T  8689211 caaaatcgtgtcacgttttcc-aaatcgtggcacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaa 8689113  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||||||||    
T  8689112 tcgtgtcacgttttcccaaaatcgtgtcacg 8689082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 25861748 - 25861618
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   ||| ||||||| ||||||||||| ||||||||||||||||||||  | ||||||||  ||||||    
T  25861748 caaaatcgtgtcacgtttgtccaaatcgtgacacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaacatgcccagcaagttgaaaat 25861649  T
Q  152 cttgtcac-attttcccaaaatcgtgtcacg 181  Q
    | ||||||  |||||||||||||||| ||||    
T  25861648 cgtgtcacgtttttcccaaaatcgtgacacg 25861618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 5268914 - 5268785
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaat 151  Q
    |||||||||||||||||  |||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||| ||||   ||||||    
T  5268914 aaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaat 5268815  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||| ||||    
T  5268814 cgtgtcacgttttcccaaaatcgtgacacg 5268785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 54867561 - 54867690
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   ||||||||||| | ||||||||| |||||||||||||  |||||| | ||||||||  ||||||    
T  54867561 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgatccaaggtacgaccaaccttatccgaaaaacgtgcccagcaagttgaaaat 54867660  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||| ||| ||||    
T  54867661 cgtgtcacgttttcccaaaattgtgacacg 54867690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 50263221 - 50263383
Alignment:
Q  8 caacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaagg 107  Q
    |||||||| ||||| ||| ||| |||   |||||||||||| | ||||||||||||||| ||||||||| |||||||   ||||||||||| | ||||||    
T  50263221 caacaaatgggtcaaagagtgcttataatgtgttcagatccagacaaaatcgtgtcacgatttcccaaaccgtgacacatttggtgcgtacga-ccaagg 50263319  T
Q  108 tacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaa 171  Q
    ||| ||||||||||| ||||||||    ||| ||||||||||||| ||| || |||||||||||    
T  50263320 tacgaccaaccttattctgaaaacttacccaccaagccgaaaatcgtgttacgttttcccaaaa 50263383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 5143644 - 5143772
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaat 151  Q
    |||||||||||||||||||| |||||||||||   |||||||| |||||||||||| | |||||||||||||||||||||   ||| ||||   ||||||    
T  5143644 aaaatcgtgtcacgttttcc-aaatcgtgacacgattggtgcgcacaacccaaggtgcgaccaaccttatcctgaaaacgtacccaacaagtttgaaaat 5143742  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||||||||| |||||||||| ||||    
T  5143743 cgtgtcacattttcacaaaatcgtgccacg 5143772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 6743130 - 6743001
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||| |||||| |||||||||||||||||||   || ||||||||  |||||||||| ||||||||||||||||||||| | ||| ||||   |||||    
T  6743130 caaaattgtgtcaagttttcccaaatcgtgacacgattagtgcgtacgtcccaaggtacgaccaaccttatcctgaaaacgtgcccaacaagtttaaaat 6743031  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| ||||||||||| |||| ||||    
T  6743030 cgtgtcacgttttcccaaaaacgtgccacg 6743001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 12745787 - 12745895
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctg-aaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaat 172  Q
    |||||||||||   |||| |||||| ||||||||||| ||||||||||||||| |||||  | ||||||||||||||||| |||||| ||||||||||||    
T  12745787 aaatcgtgacacgattggcgcgtacgacccaaggtacgaccaaccttatcctggaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaat 12745886  T
Q  173 cgtgtcacg 181  Q
    | |||||||    
T  12745887 catgtcacg 12745895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 16623008 - 16622931
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||||||| |||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||    
T  16623008 caaaatcgtgtcacgttttcc-aaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaa 16622931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 35661985 - 35661911
Alignment:
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||||| | ||| ||||||||||||| || |||||||||||||||||||||||||    
T  35661985 gtacgaccaaccttatcctgaaaacgtgcccaacaagccgaaaatcgtgacacattttcccaaaatcgtgtcacg 35661911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 8653200 - 8653111
Alignment:
Q  167 caaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttc 256  Q
    ||||||||||||||||||| ||| |||  |||| ||||||||| ||||||||||| ||||||||| || |||||| ||||||||||||||    
T  8653200 caaaatcgtgtcacgttttaccttcagatccaaacatgcattcgacatcagaaattgtgacacggttgccaaatcatgtcacgattcttc 8653111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 8665007 - 8664918
Alignment:
Q  167 caaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttc 256  Q
    ||||||||||||||||||| ||| |||  |||| ||||||||| ||||||||||| ||||||||| || |||||| ||||||||||||||    
T  8665007 caaaatcgtgtcacgttttaccttcagatccaaacatgcattcgacatcagaaattgtgacacggttgccaaatcatgtcacgattcttc 8664918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 229
Target Start/End: Complemental strand, 10071477 - 10071403
Alignment:
Q  154 tgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacac 229  Q
    ||||||||||||| |||||||||| |||||||| |||||| ||||| |||||||||| ||||||||||||||||||    
T  10071477 tgtcacattttcc-aaaatcgtgttacgttttgtctccagaaccaaacatgcattcagcatcagaaatcgtgacac 10071403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 46570115 - 46570222
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||| ||||||| |||||| |||| |||||||||||||||||||   | ||||||||||||||||  |||||| |||||||||||||    
T  46570115 aaatcgtgacacgtttgatgcgtacgacccaaagtacgaccaaccttatcctgaaaatttgcccagcaagccgaaaattgtgtcacgttttcccaaaatc 46570214  T
Q  174 gtgtcacg 181  Q
     |||||||    
T  46570215 ttgtcacg 46570222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 5148064 - 5148189
Alignment:
Q  56 atcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatctt 154  Q
    ||||||||||||||| | |||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||  ||||| |||   ||||||| |    
T  5148064 atcgtgtcacgttttgc-aaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtatccagtaagtttgaaaatcgt 5148162  T
Q  155 gtcacattttcccaaaatcgtgtcacg 181  Q
    ||||  ||||| |||||||||| ||||    
T  5148163 gtcaagttttcacaaaatcgtgccacg 5148189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 16628587 - 16628510
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||||||| |||||||||||   ||||||||||| ||||||||||| |||||||||||| ||||||    
T  16628587 caaaatcgtgtcacgttttcc-aaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcatgaaaa 16628510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 52095757 - 52095839
Alignment:
Q  100 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||| |||||| |||||||||||||||||||||    
T  52095757 acccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 52095839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 54882672 - 54882608
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcac 65  Q
    |||||||||||||||  |||| |||||||||||| |||||||||||||||||||||| |||||||    
T  54882672 gcttacccaacaaatgagtcaaagaatgcatatgtagtgttcagatccgggcaaaattgtgtcac 54882608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 29254313 - 29254206
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||| | ||||  ||| ||||||||||| ||||| ||  | ||| ||||||||||||    
T  29254313 caaaatcgtgtcacgtttttccaaatcgtgacacgtttggtgcgtacgatccaaaatacgaccaaccttattctgaatacttgcccaacaagccgaaaat 29254214  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  29254213 catgtcac 29254206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 36994365 - 36994250
Alignment:
Q  66 gttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttc 165  Q
    ||||| |||||||||||||  |||||||||||| ||| ||||||| | ||||||||||  ||||||| | | ||||||||||||||  || ||| |||||    
T  36994365 gttttgccaaatcgtgacacggttggtgcgtacgacctaaggtacgatcaaccttatctagaaaacgtgcctagcaagccgaaaattgtgacacgttttc 36994266  T
Q  166 ccaaaatcgtgtcacg 181  Q
    | ||||| ||||||||    
T  36994265 caaaaattgtgtcacg 36994250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 26176028 - 26176102
Alignment:
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||||  | ||| ||||||||||||| |||||| |||||||||||| ||||||||    
T  26176028 gtacgaccaaccttatcctgaaaacttgcccatcaagccgaaaatcgtgtcacgttttcccaaaattgtgtcacg 26176102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 2209360 - 2209192
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||||| ||||||| |||   |||||||||| | | ||||||  ||||||| ||||||||||||||||    ||||||||||| |    
T  2209360 gcttacccaacaaatgggtcaaagaatgcttatattgtgttcagattcagacaaaattttgtcacgatttcccaaatcgtgacgcgtttggtgcgtacga 2209261  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||            |||||||||||||||||  | | ||||| ||||||||| |||||| ||| |||||||||||||||||    
T  2209260 cc------------aaccttatcctgaaaacttgcctagcaaaccgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 2209192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 56179028 - 56179103
Alignment:
Q  107 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||| |  | |||||||||| |||||| |||||| |||||||||||||||||||||    
T  56179028 gtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaatcatgtcacgttttcccaaaatcgtgtcacg 56179103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 3909915 - 3909782
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||| ||||||||||||  |||||||||||  |||| ||||||| || |||||||| ||||||||||| || |||||| | | | || ||| |||||    
T  3909915 caaaatcatgtcacgttttctaaaatcgtgacacggttgatgcgtacgactcaaggtacgaccaaccttat-cttaaaacgtgccaaacatgccaaaaat 3909817  T
Q  152 cttgtcacattttcccaaaatcgtgtcacgttttg 186  Q
      |||||  |||||| |||||||||||||| ||||    
T  3909816 agtgtcatgttttccaaaaatcgtgtcacgatttg 3909782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 3777966 - 3778060
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagc-aagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||||   | ||| ||   ||||||| |||||| |||||||||||||||| ||||    
T  3777966 ttggtgcgtacgacccaaggtacgaccaaccttatcttgaaaacgtaccgagcaaatttgaaaatcgtgtcacgttttcccaaaatcgtgacacg 3778060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 52083007 - 52083084
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||| ||||||||||| ||   ||| ||| ||| ||||||||||  |||||||||||||||||||    
T  52083007 aaatcgtgtcacgtttttcccaaatcgtgtcacgattgatgcttacgacccaaggtatgaccaaccttatcctgaaaa 52083084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 52094014 - 52094091
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||| ||||||||||| ||   ||| ||| ||| ||||||||||  |||||||||||||||||||    
T  52094014 aaatcgtgtcacgtttttcccaaatcgtgtcacgattgatgcttacgacccaaggtatgaccaaccttatcctgaaaa 52094091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 5370479 - 5370554
Alignment:
Q  107 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||  |  | |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  5370479 gtacgaccaaccttatcctgaaagtcttgcccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 5370554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 5396370 - 5396327
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||    
T  5396370 ttggtgcgtacgacccaaggtacgatcaaccttatcctgaaaac 5396327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 24968888 - 24968801
Alignment:
Q  93 gcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 180  Q
    |||||| |||||| |||| ||||||||||||||||||||| ||| |||| ||  || ||| ||||||  || | ||||||||||||||    
T  24968888 gcgtacgacccaatgtacgaccaaccttatcctgaaaacgtgtcaagcatgctaaatatcgtgtcacgattgcacaaaatcgtgtcac 24968801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 26363701 - 26363656
Alignment:
Q  218 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    ||||||||||| || || ||||||||||||||||||||| ||||||    
T  26363701 aaatcgtgacatggttgccaaatcgtgtcacgattcttcactttct 26363656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 12739942 - 12740014
Alignment:
Q  107 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtc 178  Q
    |||| ||||||||||||||||||| |  | |||||||||| |||||  ||| || ||||||||||||||||||    
T  12739942 gtacgaccaaccttatcctgaaaaacttgcccagcaagccaaaaattgtgttacgttttcccaaaatcgtgtc 12740014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 12748148 - 12748220
Alignment:
Q  107 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtc 178  Q
    |||| ||||||||||||||||||| |  | |||||||||| |||||  ||| || ||||||||||||||||||    
T  12748148 gtacgaccaaccttatcctgaaaaacttgcccagcaagccaaaaattgtgttacgttttcccaaaatcgtgtc 12748220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 11210 - 11030
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||||| |||||||||||   ||||||||| |||| ||||||||||||||| |||||||||||||||||   ||||||||||| |    
T  11210 gcttacccaacaaatgggtcaaagaatgcatatattgtgttcagaaccggacaaaatcgtgtcacgatttcccaaatcgtgacacgtttggtgcgtacga 11111  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| |||| ||||||||||||||||||||  | ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  11110 cccaatgtacgaccaaccttatcctgaaaacttgcccagcaaaccgaaaatcgtgtcacatttccccaaaatcgtgtcacg 11030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 80805 - 80979
Alignment:
Q  7 ccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaag 106  Q
    ||||||||| ||| | ||||||| |||   |||||||||||||| ||||||||||||||| |||||||||||||||||   ||||||||||| |||||||    
T  80805 ccaacaaatgggtgaaagaatgcttatattgtgttcagatccggacaaaatcgtgtcacgatttcccaaatcgtgacacgtttggtgcgtacgacccaag 80904  T
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||||  | ||||||||||||||||| || ||| |||||||||||||||||||||    
T  80905 gtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgccacgttttcccaaaatcgtgtcacg 80979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 30143161 - 30143032
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||| |||||| |||| |||||||||||||| |||||  ||||||||||||||||||    
T  30143161 caaaatcgtgtcacgttttgccaaatcgtgacacggttggtgcgtacgacccaaagtacgaccaaccttatccttaaaacttgtccagcaagccgaaaat 30143062  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | ||||||||||||||||||||||||||||    
T  30143061 cgtgtcacattttcccaaaatcgtgtcacg 30143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 42435507 - 42435687
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||| ||||||| ||||| |||||||||||   ||||||||| |||| ||||||| ||||||| |||||||||||||||||   ||||||||||| |    
T  42435507 gcttaccgaacaaatgggtcaaagaatgcatatattgtgttcagaaccggacaaaatcatgtcacgatttcccaaatcgtgacacgtttggtgcgtacga 42435606  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||| ||||||||||||||||||||  | | |||||| |||||||| |||||| ||| |||||||||||||||||    
T  42435607 cccaaggtacgaccaaccttatcctgaaaacttgccaagcaagacgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 42435687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 4731477 - 4731348
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| |||||||||||||  |||||||| |||  |||||||||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  4731477 caaaatcgtgtcacgttttgccaaatcgtgacacagttggtgcctacggcccaaggtacgaccaatcttattctgaaaacgtgtccagcaagccgaaaat 4731378  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||  |||||||||||||||||||||    
T  4731377 catgtcatgttttcccaaaatcgtgtcacg 4731348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 55 - 181
Target Start/End: Complemental strand, 15212602 - 15212476
Alignment:
Q  55 aatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatctt 154  Q
    ||||||||||| |||||| |||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||  |  |||||||||||||||| |    
T  15212602 aatcgtgtcacattttcctaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgctcagcaagccgaaaatcgt 15212503  T
Q  155 gtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| |||||||||||||||||||||    
T  15212502 gtcacgttttcccaaaatcgtgtcacg 15212476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 43036242 - 43036113
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| | ||||||||| | ||||||||||||||||||  | ||| |||| |||||||    
T  43036242 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgcgtacgatccaaggtacgatcaaccttatcctgaaaacttgcccaacaagtcgaaaat 43036143  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||| ||||||||||||||||    
T  43036142 cgtgtcacgtttttccaaaatcgtgtcacg 43036113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 22976186 - 22976006
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||| || || ||| ||   ||||||||||||| | |||| |||||| ||| |||||| ||||||||||   ||||||||| | |    
T  22976186 gcttacccaacaaatgggttatggagtgcttacatagtgttcagatccagacaaagtcgtgttacgatttcccgaatcgtgacacgtttggtgcgtgcga 22976087  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| |||| || |||||||||||||||||  ||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  22976086 cccaatgtacgacaaaccttatcctgaaaacttgtcaagcaagctgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 22976006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 27811095 - 27810988
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||||||||||||||||||| ||| ||||||||||||||||||||  | ||||||||||||||||| |||||||||||| |||||||    
T  27811095 aaatcgtgacacgtttggtgcgtacaacccaagatacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacattttctcaaaatc 27810996  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  27810995 gtgtcacg 27810988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4283198 - 4283040
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    |||||| |||||||| ||||| ||||||| | |   |||||||||||||  |||||| |||||||| ||||||||||| | |||   ||||||| ||| |    
T  4283198 gcttacacaacaaatgggtcaaagaatgcttgtattgtgttcagatccgaacaaaatggtgtcacgatttcccaaatcctaacacgtttggtgcatacga 4283099  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 159  Q
    |||||||||| ||||||||||||||||||||  | ||||||||||||||||| ||||||    
T  4283098 cccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcac 4283040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 12702987 - 12703117
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaa 150  Q
    ||||||||||||||||||| ||||||||||||||    |||||||||| |||||| |||| |||||||||||||||||| |  |   ||||||| |||||    
T  12702987 caaaatcgtgtcacgtttttcccaaatcgtgacacgtatggtgcgtacgacccaatgtacgaccaaccttatcctgaaagcttgcttagcaagctgaaaa 12703086  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||||||||    
T  12703087 tcgtgtcacgttttcccaaaatcgtgtcacg 12703117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 4733622 - 4733515
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||  |||||||||||| ||||||||||| || |||  ||||||||||||| ||  || |||||||||||| |||||| |||||||||||||    
T  4733622 aaatcgtgacacggttggtgcgtacgacccaaggtacgacaaactgtatcctgaaaacgtgtttagaaagccgaaaatcgtgtcacgttttcccaaaatc 4733523  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  4733522 gtgtcacg 4733515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 40221343 - 40221236
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||||||||||| |||||||| || || |||||||||||||||||| ||||| ||||| ||||||| |||||| |||||||||||||    
T  40221343 aaatcgtgacacgtttggtgcgtacgacccaaggcacgacaaaccttatcctgaaaacgtgtccaacaagctgaaaatcgtgtcacgttttcccaaaatc 40221244  T
Q  174 gtgtcacg 181  Q
    ||| ||||    
T  40221243 gtgacacg 40221236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 5702195 - 5702065
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    |||||||||| |||||||| |||||||||||||   ||||||||||||| ||||||||| ||||||||||||||||||| |   ||||||||   |||||    
T  5702195 caaaatcgtgacacgttttgccaaatcgtgacacgattggtgcgtacaatccaaggtacgaccaaccttatcctgaaaatgtacccagcaagtttgaaaa 5702096  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||| ||||||||||| ||||    
T  5702095 tcgtgtcacgtttttccaaaatcgtgacacg 5702065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 1345718 - 1345848
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggt--acaaccaaccttatcctgaaaacgggtccagcaagccgaaa 149  Q
    |||||||||||||||||| |  ||| |||||||  |||| ||||||| |||||||||  || ||||||||||||||||||||| ||| ||||||| ||||    
T  1345718 caaaatcgtgtcacgtttcctaaaaccgtgacatggttgatgcgtacgacccaaggtgtacgaccaaccttatcctgaaaacgtgtcaagcaagctgaaa 1345817  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||  |||||||||||| | |||||||||||||    
T  1345818 attgtgtcacattttctc-aaatcgtgtcacg 1345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 1746566 - 1746697
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| ||||||| ||   ||| ||||||| | ||||||||| ||||||||||||||||||| |  | |||||||||| |||    
T  1746566 caaaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 1746665  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| ||||||  ||||||||||||||||||||    
T  1746666 atcgtgtcacgatttcccaaaatcgtgtcacg 1746697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 11383585 - 11383479
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||  |||| ||||||| |||||| |||| |||||||||||| ||||||   | ||||||||| ||||||| |||||| |||||||||||||    
T  11383585 aaatcgtgacacggttgatgcgtacgacccaaagtacgaccaaccttatcttgaaaatttgcccagcaagctgaaaatcgtgtcacgttttcccaaaatc 11383486  T
Q  174 gtgtcac 180  Q
    |||||||    
T  11383485 gtgtcac 11383479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 34256854 - 34256983
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||||||||| ||||||||||||| |  |  ||||||||| |||||    
T  34256854 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgacccaaggtacaaccaatcttatcctgaaaatcttgctcagcaagccaaaaat 34256953  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | ||||||  ||||||||||||||||||||    
T  34256954 cgtgtcacgatttcccaaaatcgtgtcacg 34256983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 4743548 - 4743672
Alignment:
Q  58 cgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctg-aaaacgggtccagcaagccgaaaatcttgt 156  Q
    ||||| ||||||| |||||| ||||||  |||| ||||||| ||||| ||||| ||||||||||||||| |||||| | | |||||| |||||||| |||    
T  4743548 cgtgtgacgttttgccaaattgtgacacggttgatgcgtacgacccacggtacgaccaaccttatcctgaaaaacgtgccaagcaagtcgaaaatcgtgt 4743647  T
Q  157 cacattttcccaaaatcgtgtcacg 181  Q
    ||| ||| | |||||||||||||||    
T  4743648 cacgtttcctcaaaatcgtgtcacg 4743672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 19175445 - 19175318
Alignment:
Q  54 aaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatc 152  Q
    ||||||| ||||||||||| |||||||| ||   ||||||| ||| |||||||||| ||||||||||||||||||||||   ||||||||   |||||||    
T  19175445 aaatcgtatcacgttttcc-aaatcgtggcacgattggtgcatacgacccaaggtataaccaaccttatcctgaaaacgtacccagcaagtttgaaaatc 19175347  T
Q  153 ttgtcacattttcccaaaatcgtgtcacg 181  Q
     |||||| |||||||||||||||| ||||    
T  19175346 atgtcacgttttcccaaaatcgtgacacg 19175318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 33351969 - 33351893
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaa 128  Q
    ||||||||||||||||||||||||||| |||||   ||||||||||  ||||||||||| |||||||||||||||||    
T  33351969 caaaatcgtgtcacgttttcccaaatcatgacacgtttggtgcgtatgacccaaggtacgaccaaccttatcctgaa 33351893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 34254678 - 34254805
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||| ||||||||||||||||||| |  | ||||||| || |||||    
T  34254678 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaatcttgcccagcaatccaaaaat 34254777  T
Q  152 cttgtcacattttcccaaaatcgtgtca 179  Q
    | ||||||  ||||||||||||||||||    
T  34254778 cgtgtcacgatttcccaaaatcgtgtca 34254805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 23799291 - 23799211
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    ||||||||||||||||||  |||||||||||||   ||||||||||| |||||| |||| ||||||||||| || ||||||    
T  23799291 caaaatcgtgtcacgtttgtccaaatcgtgacacaattggtgcgtacgacccaacgtacgaccaaccttattctaaaaacg 23799211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 4731313 - 4731267
Alignment:
Q  217 gaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  4731313 gaaatcgtgacacggttgtcaaatcgtgtcacgattcttcactttct 4731267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 42497986 - 42497904
Alignment:
Q  100 acccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| || |||||||||||||||| |  | |||||||||| | |||| ||||||| ||||||||||||||||||||    
T  42497986 acccaaggtacgactaaccttatcctgaaaatcttgcccagcaagccaataatcgtgtcacaatttcccaaaatcgtgtcacg 42497904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 4696307 - 4696263
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  4696307 ttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacg 4696263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 10014957 - 10014849
Alignment:
Q  73 caaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaat 172  Q
    ||||||||||||   ||| ||| ||| ||||||||||| ||||||||||||||| ||||| | | |||| ||| |||||| |||||   || ||||||||    
T  10014957 caaatcgtgacacgattgatgcatacgacccaaggtacgaccaaccttatcctgtaaacgtgccaagcatgccaaaaatcgtgtcatgattgcccaaaat 10014858  T
Q  173 cgtgtcacg 181  Q
    |||||||||    
T  10014857 cgtgtcacg 10014849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 31218077 - 31217947
Alignment:
Q  52 caaaatcgtgtcacgttttc-ccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    |||||||||||||||||||  || ||||||| ||   ||| ||||||  | ||||||||| |||||||||||||| |||| |  | ||| |||||| |||    
T  31218077 caaaatcgtgtcacgttttttcccaatcgtgtcacgattgatgcgtatgatccaaggtacgaccaaccttatcctaaaaatcttgcccaacaagccaaaa 31217978  T
Q  150 atcttgtcacattttcccaaaatcgtgtcac 180  Q
    ||| ||||||  |||||||||||||||||||    
T  31217977 atcgtgtcacgatttcccaaaatcgtgtcac 31217947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 17982473 - 17982364
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| ||||||| ||   ||| ||||||| | ||||||||| |||||||||||||| |||| |  | |||||||||| |||    
T  17982473 caaaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctaaaaatcttgcccagcaagccaaaa 17982374  T
Q  150 atcttgtcac 159  Q
    ||| ||||||    
T  17982373 atcgtgtcac 17982364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 19948669 - 19948778
Alignment:
Q  52 caaaatcgtgtcacg-ttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||| ||||||| ||||||| ||   ||| ||||||| | ||||||||| ||||| |||||| | |||| |  |||||||||||| |||    
T  19948669 caaaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaacttatcataaaaatcttgtccagcaagccaaaa 19948768  T
Q  150 atcttgtcac 159  Q
    ||| ||||||    
T  19948769 atcgtgtcac 19948778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 4569603 - 4569423
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    |||||| |||||||| ||||| ||||||| |||    |||||| ||||| ||||||||||||||||||||||  || |||||||  |||||||||||| |    
T  4569603 gcttactcaacaaatgggtcaaagaatgcttatattttgttcaaatccgagcaaaatcgtgtcacgttttccacaaccgtgacacggttggtgcgtacga 4569504  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  4569503 cccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgttttcccaaaatcatgtcacg 4569423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 43404253 - 43404429
Alignment:
Q  5 acccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaaccca 104  Q
    ||||||||||| ||||| ||||| |||||   ||||||||||||||  |||||||||||||| |||||||||||||||||   ||||||||||| |||||    
T  43404253 acccaacaaatgggtcaaagaatacatatattgtgttcagatccggagaaaatcgtgtcacgatttcccaaatcgtgacacgtttggtgcgtacgaccca 43404352  T
Q  105 aggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||| ||| ||||||||||||||||  |  |||||||||||||||| |||||| ||| |||||||||||||||||    
T  43404353 aggtacgaccgaccttatcctgaaaacttgctcagcaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcacg 43404429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 55302481 - 55302660
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| |||||| || ||| ||   ||||||||||||||| |||||| |||||||| |||||||||||||||||   ||||||||||| |    
T  55302481 gcttacccaacaaatgggtcatggagtgcttacatagtgttcagatccggacaaaattgtgtcacgatttcccaaatcgtgacacgtttggtgcgtacga 55302580  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||| ||||||||||||||||||||  | ||||||||||||||||| | |||| ||||||| |||||||||||||    
T  55302581 cccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtatcacgttttccc-aaatcgtgtcacg 55302660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 36018502 - 36018334
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||          
T  36018502 gcttatccaacaaatgggtcaaagaatgcatatgtagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacatggttggtgc------ 36018409  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
          |||| |||||||||||||| |||||| | ||||||||||||||||  |||||| |||||||||||||||||||||    
T  36018408 ------gtacgaccaaccttatcctaaaaacgtgcccagcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacg 36018334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 6096127 - 6096295
Alignment:
Q  12 aaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtaca 111  Q
    |||| ||||| ||||||||||| | ||||||| |||| | ||||||||||||| | |||||||||||||||||   ||||||||||| |||||||||||     
T  6096127 aaatgggtcaaagaatgcatatactgtgttcatatcctgacaaaatcgtgtcatgatttcccaaatcgtgacacatttggtgcgtacgacccaaggtacg 6096226  T
Q  112 accaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 180  Q
    |||||||||||||||||||   |||||  |||||||||||| |||||| ||||||||||||||||||||    
T  6096227 accaaccttatcctgaaaatttgtccaataagccgaaaatcgtgtcacgttttcccaaaatcgtgtcac 6096295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 29812882 - 29812753
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||  | |||||||| | |||||    
T  29812882 caaaatcgtgtcacgtttttccaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgcccagcaagacaaaaat 29812783  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||||||||    
T  29812782 cgtgtcacgttttcccaaaatcgtgtcacg 29812753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 54593321 - 54593176
Alignment:
Q  36 agtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggt 135  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||   ||||||||||| |||||| |||| ||||||||||||||||||||| |     
T  54593321 agtgttcagattcgggcaaaatcgtgtcatgatttcccaaatcgtgacacgtttggtgcgtacgacccaatgtacgaccaaccttatcctgaaaacgtgc 54593222  T
Q  136 ccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||  ||||||| |||||| |||||||||||| | ||||||    
T  54593221 ccagcaagttgaaaatcgtgtcacgttttcccaaaattgagtcacg 54593176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 43402310 - 43402486
Alignment:
Q  5 acccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaaccca 104  Q
    |||||||||||  |||| |||||||||||    |||||||||| |  ||||||| ||||||  |||||||||||||||||   ||||||||||| |||||    
T  43402310 acccaacaaatgagtcaaagaatgcatatattatgttcagatcagaacaaaatcatgtcacaatttcccaaatcgtgacacgtttggtgcgtacgaccca 43402409  T
Q  105 aggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || ||||||||||||||||||||||||  | ||||||||||||||||| |||||| |||  ||||||||||||||||    
T  43402410 agatacaaccaaccttatcctgaaaacttgcccagcaagccgaaaatcgtgtcacgtttctccaaaatcgtgtcacg 43402486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 31340557 - 31340739
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaa-tcgtgacaatgttggtgcgtaca 99  Q
    ||||||||||||||| ||||| |||||||||||   ||||||||||| || ||||||| ||||||| ||||||||| ||||| ||   |||||||||||     
T  31340557 gcttacccaacaaatgggtcaaagaatgcatatattgtgttcagatctggacaaaatcatgtcacgatttcccaaaatcgtgtcacgtttggtgcgtacg 31340656  T
Q  100 acccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtca-cattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| ||||||||||||||||||||  | ||| ||||||||||||| |||||   ||||||||||||| |||||||    
T  31340657 acccaaggtacgaccaaccttatcctgaaaacttgcccaacaagccgaaaatcgtgtcatgtttttcccaaaatcatgtcacg 31340739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 40912987 - 40912809
Alignment:
Q  3 ttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacc 102  Q
    ||||||||||||| ||||| ||||||| ||   ||||||||||||||| ||||||||||||| | |||||||||||||||||   ||||||||||| | |    
T  40912987 ttacccaacaaatgggtcaaagaatgcttacatagtgttcagatccggacaaaatcgtgtcatgatttcccaaatcgtgacacgtttggtgcgtacgatc 40912888  T
Q  103 caaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||| |||| |||||||| ||||||  | ||| ||||||||||||| |||||| |||||||||||| || |||||    
T  40912887 caagatacgaccagccttatccagaaaacttgcccaacaagccgaaaatcgtgtcacgttttcccaaaattgtatcacg 40912809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 5236806 - 5236935
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||| ||||||||||| ||||| ||||||||||||||    ||||||||||||||||    
T  5236806 caaaatcgtgtcacgttttgccaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaaacttatcctgaaaactttcccagcaagccgaaaat 5236905  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||| ||||||||    
T  5236906 cgtgtcacgttttcccaaaattgtgtcacg 5236935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 40592486 - 40592357
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   |||||| |||| | ||||||||| ||||||||||||||||||||| ||||||||||  ||||||    
T  40592486 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgtgtacgatccaaggtacgaccaaccttatcctgaaaacgtgtccagcaagttgaaaat 40592387  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||| ||||    
T  40592386 cgtgtcacgttttcccaaaatcgtgacacg 40592357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 29810687 - 29810558
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||   |||||||||||| |||||    
T  29810687 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaatttgtccagcaagccaaaaat 29810588  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
      ||  || |||| | ||||||||||||||    
T  29810587 tgtgctacgtttttctaaaatcgtgtcacg 29810558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 30235724 - 30235616
Alignment:
Q  147 aaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtc 246  Q
    |||||| |||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||  |||||||||||||||||||| || |||||||||||    
T  30235724 aaaatcgtgtcacgttttcc-aaaatcgtgtcacgttttgccttcagaaccaaacatgcattcggcatcagaaatcgtgacacggttgccaaatcgtgtc 30235626  T
Q  247 acgattcttc 256  Q
    ||||||||||    
T  30235625 acgattcttc 30235616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 8127012 - 8127141
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||  ||||||| |||| ||||||| ||| |||||||||||||||||||||   | ||||||  ||||||    
T  8127012 caaaatcgtgtcacgtttgtccaaatcgtgacacggttggtgtgtacgacccaagatacgaccaaccttatcctgaaaacgtacctagcaagttgaaaat 8127111  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | ||||||| ||||||||||||||| ||||    
T  8127112 cgtgtcacactttcccaaaatcgtgacacg 8127141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 44331352 - 44331259
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||   |||||||||| |||||| |||||| |||||||||||||||||||||    
T  44331352 ttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagccaaaaatcgtgtcactttttcccaaaatcgtgtcacg 44331259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 1736008 - 1735884
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   ||||||||||||||||||||||| |||||||||||||| |||| | |||   ||||  ||||||    
T  1736008 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacaacccaaggtacgaccaaccttatcctaaaaatgtgtcattcaagttgaaaat 1735909  T
Q  152 cttgtcacattttcccaaaatcgtg 176  Q
    | |||||| ||||||||||||||||    
T  1735908 cgtgtcacgttttcccaaaatcgtg 1735884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 24694870 - 24694779
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag 143  Q
    ||||||||||| ||||||  |||||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  24694870 caaaatcgtgttacgtttgtccaaatcgtgacacgattggtgcgtacaacccaaggtacgaccaaccttatcctgaaaacgtgtccagcaag 24694779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 34490811 - 34490704
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||  | |||  |||||||||||| |||||| |||| ||||||||    
T  34490811 aaatcgtgacacgtttggtgcgtacgacccaaggtacaaccaaccttatcctgaaaacttgcccaataagccgaaaatcgtgtcacgtttttccaaaatc 34490712  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  34490711 gtgtcacg 34490704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 49200040 - 49200147
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||| ||| ||||| |||    
T  49200040 aaatcgtgacacatttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacatgcccagcaagccgaaaatcgtgtcacgtttccccaacatc 49200139  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  49200140 gtgtcacg 49200147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 8370193 - 8370064
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaa-gccgaaaa 150  Q
    ||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||| |||||||||||||| ||||||   |||||||    |||||    
T  8370193 caaaatcgtgtcacgttttcc-aaatcgtgacacgattggtgcgtacaacccaaggtacgaccaaccttatcctaaaaacgttcccagcaattttgaaaa 8370095  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||| ||||    
T  8370094 tcgtgtcacgttttcccaaaatcgtgacacg 8370064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 46173318 - 46173206
Alignment:
Q  68 tttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttccc 167  Q
    |||||||| ||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||| | ||| |||||||  |||| |||||  |||||||    
T  46173318 tttcccaattcgtgacacggttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtgcccaacaagccg-gaatcgtgtcatgttttccc 46173220  T
Q  168 aaaatcgtgtcacg 181  Q
    ||||||||||||||    
T  46173219 aaaatcgtgtcacg 46173206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 40845037 - 40845157
Alignment:
Q  54 aaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcct-gaaaacgggtccagcaagccgaaaatc 152  Q
    |||| |||||||||||  |||||||||||||   ||||||||||||||||||||||| ||||||||||||||  |||||| |||||||| |  |||||||    
T  40845037 aaattgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacaacccaaggtacgaccaaccttatcctaaaaaacgtgtccagcacgttgaaaatc 40845136  T
Q  153 ttgtcacattttcccaaaatc 173  Q
     |||||| |||||||||||||    
T  40845137 gtgtcacgttttcccaaaatc 40845157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 48438598 - 48438727
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaat 151  Q
    |||||||||||||||||  |||||||||||||   ||||||||||| | |||||||||||||||||||||||||||||||   ||| ||||   ||||||    
T  48438598 aaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgatccaaggtacaaccaaccttatcctgaaaacgtacccatcaagtttgaaaat 48438697  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| ||| |||||||||||| ||||    
T  48438698 cgtgtcacgtttccccaaaatcgtgacacg 48438727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 16264731 - 16264860
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||| ||||| |||||||| ||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||| ||   |||||    
T  16264731 caaaatcgtgtcacgctttcc-aaatcgtggcacgattggtgcgtaccacccaaggtacgaccaaccttatcctgaaaacgtacccagctagtttgaaaa 16264829  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||| ||||    
T  16264830 tcgtgtcacgttttcccaaaatcgtgacacg 16264860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 36029475 - 36029605
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    |||||| |||||||||||| | ||| |||||||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   |||||    
T  36029475 caaaattgtgtcacgtttttctaaaccgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaa 36029574  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||| ||||||||||| ||||    
T  36029575 tcgtgtcacgtttttccaaaatcgtgacacg 36029605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 39032259 - 39032130
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||| ||| | |||||||| ||   ||||||||||| ||||||||||| |||||| ||||||||||||||   ||||||||   |||||    
T  39032259 caaaatcgtgtcacgattttc-aaatcgtggcacgattggtgcgtacgacccaaggtacgaccaactttatcctgaaaacgtacccagcaagtttgaaaa 39032161  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || ||||||||||||||||||||||| ||||    
T  39032160 tcgtgtcacattttcccaaaatcgtgacacg 39032130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 47923608 - 47923530
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||||  |||||||||||||   ||| ||||||||||||||||||| |||||||||||||||||||    
T  47923608 caaaatcgtgtcacgtttgtccaaatcgtgacacgattgatgcgtacaacccaaggtacgaccaaccttatcctgaaaa 47923530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 7762082 - 7761954
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||    
T  7762082 aaatcgtgtcacgtttttccccaatcgtgtcacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaat 7761983  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | ||||||  ||||||||||||||||||||    
T  7761982 cgtgtcac-gtttcccaaaatcgtgtcacg 7761954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 44331796 - 44331925
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||| || ||||||| ||||||||||||||   |||||| |||| ||||||||||| || ||| ||||| ||||||||   |||| ||||| |||||    
T  44331796 caaaatcatgccacgtttccccaaatcgtgacacatttggtgtgtacgacccaaggtacgactaactttatcttgaaaacgtacccaggaagccaaaaat 44331895  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||| ||||||||||||||||    
T  44331896 cgtgtcacgtttttccaaaatcgtgtcacg 44331925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 30709501 - 30709423
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||||| |||||||||||||   ||||||||||| ||||||||||  ||||| |||||||||||||    
T  30709501 caaaatcgtgtcacgtttttccaaatcgtgacacgattggtgcgtacgacccaaggtaagaccaatcttatcctgaaaa 30709423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 7764270 - 7764141
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| |||| || ||   ||| ||||||| ||||||||||| |||||||||||||| |||| |  | ||| |||||| |||||    
T  7764270 aaatcgtgtcacgtttttccccaatcatgtcacgattgatgcgtacgacccaaggtacgaccaaccttatcctaaaaatcttgcccaacaagccaaaaat 7764171  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||||||||    
T  7764170 cgtgtcacgttttcccaaaatcgtgtcacg 7764141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 5258492 - 5258623
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| ||||||| ||   | | ||||||| |  |||||||| ||||||||||||||||||| |  | |||||||||| |||    
T  5258492 caaaatcgtgtcacgtttttccccaatcgtgccacaatcgatgcgtacgattcaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 5258591  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| ||||||  ||||||||||||||||||||    
T  5258592 atcgtgtcacgatttcccaaaatcgtgtcacg 5258623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 9636476 - 9636607
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| ||||||| ||   ||| ||||||| | ||||||||| ||||||||||||||||||| |  ||||| |||||| |||    
T  9636476 caaaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgtccatcaagccaaaa 9636575  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| |||||   |||||||||||| |||||||    
T  9636576 atcgtgtcatgatttcccaaaatcatgtcacg 9636607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 27027088 - 27027218
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctg-aaaacgggtccagcaag-ccgaaa 149  Q
    ||||||||||||||||||||| ||| |||| ||   ||||||||||| ||||||||||| ||||||||||||||| |||| |   ||||||||   ||||    
T  27027088 caaaatcgtgtcacgttttccaaaa-cgtggcacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaaatgtagccagcaagtttgaaa 27027186  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| |||||| |||||||||||||||| ||||    
T  27027187 atcgtgtcacgttttcccaaaatcgtgacacg 27027218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 40735248 - 40735117
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctg-aaaacgggtccagcaag-ccgaaa 149  Q
    ||||||||||||||||||  ||||||| | |||   ||||||||||| ||||||||||| ||||||||||||||| |||| |   ||||||||   ||||    
T  40735248 caaaatcgtgtcacgtttgtccaaatcataacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaaatgtagccagcaagtttgaaa 40735149  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| |||||| |||||||||||||||| ||||    
T  40735148 atcgtgtcacgttttcccaaaatcgtgacacg 40735117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 47303850 - 47303763
Alignment:
Q  169 aaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttc 256  Q
    ||||| ||||||||||||||| ||| ||| | |||||||||  ||||| |||||||| ||||| || |||||||||||||||||||||    
T  47303850 aaatcatgtcacgttttgccttcagaaccgaacatgcattcggcatcaaaaatcgtgtcacggttgccaaatcgtgtcacgattcttc 47303763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 23410681 - 23410759
Alignment:
Q  54 aaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    |||| |||||||||||| |||||||||||||  ||||||| | |||||||||||||| ||||| |||||| ||||||||    
T  23410681 aaattgtgtcacgttttgccaaatcgtgacacggttggtgtgaacaacccaaggtacgaccaaacttatcttgaaaacg 23410759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 27038459 - 27038548
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtg 176  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    ||| ||||   ||||||| |||||||||||||||||||||||    
T  27038459 ttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacatacccaacaagtttgaaaatcgtgtcacattttcccaaaatcgtg 27038548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 21711603 - 21711713
Alignment:
Q  72 ccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaa 170  Q
    |||||||||||||   ||||||||||| ||||||||||| ||||||||||||| |||||||    |||||||   ||||||  |||||| ||||||||||    
T  21711603 ccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatccggaaaacgtactcagcaagtttgaaaattgtgtcacgttttcccaaa 21711702  T
Q  171 atcgtgtcacg 181  Q
    |||||| ||||    
T  21711703 atcgtgacacg 21711713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 40734317 - 40734239
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    |||||| |||||||||||  |||||||||||||   ||| ||||||| | ||||||||| |||||||||||||||||||    
T  40734317 caaaattgtgtcacgtttgtccaaatcgtgacacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaa 40734239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 45094982 - 45094853
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| |||||||   ||||||||| ||||||||||||||||||| |  | ||| |||||| |||||    
T  45094982 aaatcgtgtcacgtttttccccaatcgtgtcacgattgatgcgtacgttccaaggtacgaccaaccttatcctgaaaatcttgcccaacaagccaaaaat 45094883  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | ||||||  ||||||||||| ||||||||    
T  45094882 cgtgtcacgatttcccaaaattgtgtcacg 45094853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 49199987 - 49200047
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtg 61  Q
    ||||||||||||||| ||||| |||||||||||   |||||||||||||| ||||||||||    
T  49199987 gcttacccaacaaatgggtcaaagaatgcatatattgtgttcagatccggacaaaatcgtg 49200047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 16498840 - 16498756
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| ||||| ||||| |||||||||||   |  |||| ||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  16498840 cgtacgacccacggtacgaccaaccttat---gtcaacgtgtcaagcaagccgaaaatcgtgacacattttcccaaaatcgtatcacg 16498756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 25929100 - 25929023
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaa 129  Q
    ||||||||||||||| ||  ||||||||| |||  |||||| ||||| | |||| |||| ||||||||||||||||||    
T  25929100 caaaatcgtgtcacgattggccaaatcgtaacacggttggtacgtacgatccaatgtacgaccaaccttatcctgaaa 25929023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 31340775 - 31340820
Alignment:
Q  218 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    |||||||||||||| || ||||||||||||||||||||| ||||||    
T  31340775 aaatcgtgacacggttgccaaatcgtgtcacgattcttcactttct 31340820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 34490669 - 34490623
Alignment:
Q  217 gaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    ||||||||||||||| || |||||||||||| |||||||| ||||||    
T  34490669 gaaatcgtgacacggttgccaaatcgtgtcatgattcttcactttct 34490623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 37726058 - 37726135
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| | ||||| |||||| |||| ||||||||||||||||||||    
T  37726058 aaaatcgtgccacgttttcc-aaatcgtgtcacgattgatacgtacgacccaatgtacgaccaaccttatcctgaaaac 37726135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 44331223 - 44331177
Alignment:
Q  217 gaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    ||||||||||||||| || |||| |||||||||||||||| ||||||    
T  44331223 gaaatcgtgacacggttgccaaagcgtgtcacgattcttcactttct 44331177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 51398633 - 51398587
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtac 98  Q
    |||||||||||||| ||||||||||||||||||   |||||||||||    
T  51398633 caaaatcgtgtcacattttcccaaatcgtgacacgtttggtgcgtac 51398587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 3393341 - 3393296
Alignment:
Q  136 ccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||| |||||| ||||||  ||||||||||||||||||||    
T  3393341 ccagcaagccaaaaatcgtgtcacgatttcccaaaatcgtgtcacg 3393296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 37408236 - 37408199
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  37408236 cgtacgacccaaggtacgaccaaccttatcctgaaaac 37408199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 51398590 - 51398517
Alignment:
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 180  Q
    |||| ||||||| |||||| |||||  | ||| ||| ||||||||  |||||| ||||||||||||||||||||    
T  51398590 gtacgaccaaccatatcctaaaaacttgcccaacaaaccgaaaattgtgtcacgttttcccaaaatcgtgtcac 51398517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 27974615 - 27974579
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  27974615 cgtacgacccaaggtacaaccaaccttatcatgaaaa 27974579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 35925908 - 35925952
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    |||||||||||| | ||| |||| |||||||||||||||||||||    
T  35925908 ttggtgcgtacatctcaatgtacgaccaaccttatcctgaaaacg 35925952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 6e-42; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 6360428 - 6360607
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||||| ||||||| |||   |||||||||||||| ||||||||||||||  |||||||||||||||||   ||||||||||| |    
T  6360428 gcttacccaacaaatgggtcaaagaatgcttataatgtgttcagatccggacaaaatcgtgtcacaatttcccaaatcgtgacacgtttggtgcgtacga 6360527  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 180  Q
    |||||| ||| |||||| |||||||||||||  | ||| ||||||||||||| |||||| ||| ||||||||||||||||    
T  6360528 cccaagatacgaccaacattatcctgaaaacttgcccaacaagccgaaaatcgtgtcacgtttccccaaaatcgtgtcac 6360607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 47674292 - 47674421
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||| ||||| ||||||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  47674292 caaaatcatgtcatgttttccaaaatcgtgacacgtttggtgcgtacaacccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaat 47674391  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||||||||    
T  47674392 cgtgtcacgttttcccaaaatcgtgtcacg 47674421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 47676485 - 47676614
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||| |||||||||||||| |||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  47676485 caaaattgtgtcacgttttccaaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaat 47676584  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||||||||    
T  47676585 cgtgtcacgttttcccaaaatcgtgtcacg 47676614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 27347742 - 27347614
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||| |||||||||| |||||||   ||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  27347742 caaaatcgtgtcacattttcccaaaccgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaat 27347643  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||  |||||||||||||||||||||    
T  27347642 catgtca-gttttcccaaaatcgtgtcacg 27347614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 2647412 - 2647283
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||| ||||||||  |||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||    
T  2647412 caaaatcgtatcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaat 2647313  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||| ||||    
T  2647312 catgtcacgttttcccaaaatcgtgacacg 2647283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 14070182 - 14070312
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaa 150  Q
    |||||||||||||||||||||||||||||||||   ||||||| ||| ||||||||||| |||||||||||| |||||| |  | | |||||| ||||||    
T  14070182 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgcatacgacccaaggtacgaccaaccttatcttgaaaaacttgcctagcaagtcgaaaa 14070281  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||||||||    
T  14070282 tcgtgtcacgttttcccaaaatcgtgtcacg 14070312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 14380210 - 14380340
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaa 150  Q
    |||||||||||||||||||||||||||||||||   ||||||| ||| ||||||||||| |||||||||||| |||||| |  | | |||||| ||||||    
T  14380210 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgcatacgacccaaggtacgaccaaccttatcttgaaaaacttgcctagcaagtcgaaaa 14380309  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||||||||    
T  14380310 tcgtgtcacgttttcccaaaatcgtgtcacg 14380340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 4585980 - 4585851
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||| ||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||  |||||||    ||| |||||| |||||    
T  4585980 caaaatcgtgtcacattttcccaaatcgtgacatgtttggtgcgtacgacccaaggtacgaccaaccttatattgaaaacttacccaacaagccaaaaat 4585881  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||| |||||||||||| ||||||||    
T  4585880 cttgtcacgttttcccaaaatagtgtcacg 4585851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 32358387 - 32358532
Alignment:
Q  36 agtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggt 135  Q
    ||||||||||||||| ||||||||||||||  ||| ||||||| |||||   ||||||||||| | ||||||||| | |||| |||||||||||||| |     
T  32358387 agtgttcagatccggacaaaatcgtgtcacaattttccaaatcatgacacgtttggtgcgtacgatccaaggtacgatcaactttatcctgaaaacgtgc 32358486  T
Q  136 ccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||| ||||||  |||||| ||||||||||||||| |||||    
T  32358487 ccagcaagctgaaaattgtgtcacgttttcccaaaatcgtatcacg 32358532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 18126463 - 18126339
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||| ||||||||||||   ||||||||||| ||||||||||| |||||| |||||||||||||  | ||| ||||||||||||    
T  18126463 caaaatcgtgtcacgttttctcaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaacattatcctgaaaacttgcccaacaagccgaaaat 18126364  T
Q  152 cttgtcacattttcccaaaatcgtg 176  Q
    | | |||| |||| |||||||||||    
T  18126363 cgtatcacgtttttccaaaatcgtg 18126339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 26417132 - 26417004
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||| ||  |||||||||||||  |||||||||||| ||||||||||| |||||||||| |||||||||  ||||| ||| |  |||||    
T  26417132 caaaatcgtgtcacgattggccaaatcgtgacacggttggtgcgtacgacccaaggtacgaccaaccttaccctgaaaacttgtccaacaaactaaaaat 26417033  T
Q  152 cttgtcacattttcccaaaatcgtgtcac 180  Q
    | |||||||||| ||||||||||||||||    
T  26417032 cgtgtcacatttccccaaaatcgtgtcac 26417004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 2761651 - 2761758
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||| ||||||||||||||  | ||||||||| ||||||    
T  2761651 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaatcttatcctgaaaacttgcccagcaagctgaaaat 2761750  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  2761751 cgtgtcac 2761758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 48489249 - 48489120
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||| ||||||||||| |||||||||||||   ||||||||||||||||||||||  ||||||||||||||| || |  | |||||||||| ||||     
T  48489249 caaaatcatgtcacgttttgccaaatcgtgacacgattggtgcgtacaacccaaggtatgaccaaccttatcctggaagcatgcccagcaagccaaaaac 48489150  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| ||||||| |||||||||||||    
T  48489149 cgtgtcacgttttccctaaatcgtgtcacg 48489120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 4538900 - 4539029
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||  |||| |||||||||||||   ||||||||||| | ||||||||| ||||||||| ||||||||||  |   ||||| ||||||||    
T  4538900 caaaatcgtgtcatattttgccaaatcgtgacacgtttggtgcgtacgatccaaggtacgaccaaccttgtcctgaaaacttgcttagcaaaccgaaaat 4538999  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||||||||    
T  4539000 cgtgtcacgttttcccaaaatcgtgtcacg 4539029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 2389871 - 2389764
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   |||||| |||| | ||||||||| |||||||||||||||||||||   ||||||||| ||||||| |||||||||||| |||||||    
T  2389871 aaatcgtgacacgtttggtgtgtacgatccaaggtacgaccaaccttatcctgaaaacgttcccagcaagctgaaaatcgtgtcacattttctcaaaatc 2389772  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  2389771 gtgtcacg 2389764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 48491397 - 48491290
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||| ||||||||||| |||||||||||||  |||||||||||| ||||||||||| |||||||| ||| ||||| || | ||| ||||||||||||    
T  48491397 caaaatcatgtcacgttttgccaaatcgtgacacggttggtgcgtacgacccaaggtacgaccaacctaatcttgaaagcgtgcccaacaagccgaaaat 48491298  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  48491297 cgtgtcac 48491290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 21983625 - 21983704
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    ||||||||||||||||||||| |||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||    
T  21983625 caaaatcgtgtcacgttttcc-aaatcgtgacacaattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacg 21983704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 33332165 - 33332041
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||  ||  |||||||||||||   ||||||||||| ||||||||||| |||||||||||| |||||| | | ||||||||  ||||||    
T  33332165 caaaatcgtgtcacaattgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcttgaaaatgtgcccagcaagttgaaaat 33332066  T
Q  152 cttgtcacattttcccaaaatcgtg 176  Q
    | |||||| |||| |||||||||||    
T  33332065 cgtgtcacgtttttccaaaatcgtg 33332041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 496343 - 496481
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||| |||||||| || |||||||||||  |||| ||||||| || ||||||| | |||||||||||||||||| | ||| |||| ||| ||||     
T  496343 caaaatcgtatcacgtttcccaaaatcgtgacacggttgatgcgtacgactcaaggtaaatccaaccttatcctgaaaatgtgtcaagcatgccaaaaac 496442  T
Q  152 cttgtcacattttcccaaaatcgtgtcacgttttgcctcc 191  Q
    | || ||| ||||||| ||||| |||||||||||||||||    
T  496443 cgtgacacgttttccc-aaatcatgtcacgttttgcctcc 496481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 23554860 - 23554729
Alignment:
Q  52 caaaatcgtgtcacgttttccca-aatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    |||||||||||||||||||||   ||||||| ||   ||| ||||||| |||||| |||| ||||||||||||||||||| |  | |||||||| |||||    
T  23554860 caaaatcgtgtcacgttttccattaatcgtgtcacgattgatgcgtacgacccaatgtacgaccaaccttatcctgaaaaacttgcccagcaagtcgaaa 23554761  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| |||||| |||||||||||||||||||||    
T  23554760 atcgtgtcacgttttcccaaaatcgtgtcacg 23554729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 43864044 - 43863951
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    | | ||| ||||||||| |||||| |||||||||||||||||||||    
T  43864044 ttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaactttcctaacaaaccgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 43863951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 46516023 - 46515923
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| |||||||||||||   ||||||| ||| |||||||||   ||||||||||||||||||||| | ||| |||||| |||||    
T  46516023 caaaatcgtgtcacgttttgccaaatcgtgacatgcttggtgcatacgacccaaggtgtgaccaaccttatcctgaaaacgtgcccaacaagccaaaaat 46515924  T
Q  152 c 152  Q
    |    
T  46515923 c 46515923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 49092071 - 49092203
Alignment:
Q  52 caaaatcgtgtcacgttttcc-caaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagc-cgaa 148  Q
    |||||||||||||||||||   ||||||||| || | ||||||| ||| | ||||||||| ||||||||||||||||||| ||   ||||||||  ||||    
T  49092071 caaaatcgtgtcacgttttgttcaaatcgtgtcactattggtgcatacgatccaaggtacgaccaaccttatcctgaaaaacgtacccagcaagttcgaa 49092170  T
Q  149 aatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||||||| ||||    
T  49092171 aatcgtgtcacattttcccaaaatcgtgacacg 49092203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 1113475 - 1113368
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| ||||  |||||||   ||||||||||| ||||||||||| |||||||||||||||||||   | ||| || |||||||||    
T  1113475 caaaatcgtgtcacgttttgccaatacgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaatttgcccatcaggccgaaaat 1113376  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  1113375 cgtgtcac 1113368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 4796384 - 4796255
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  | |||| |||| |   ||||||||||| | ||||||||| ||||||  ||||||||||||| | ||| ||||  ||||||    
T  4796384 caaaatcgtgtcacgtttgtctaaattgtgatacatttggtgcgtacgatccaaggtacgaccaactctatcctgaaaacgtgcccatcaagttgaaaat 4796285  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||| ||||||||||||||||    
T  4796284 cgtgtcacgtttttccaaaatcgtgtcacg 4796255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 19495789 - 19495659
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagcc-gaaaa 150  Q
    ||||||||||||||||| |||| |||||| ||   ||| ||||||| ||||||||||| ||||||||||||||||||| |  | ||||||||||  ||||    
T  19495789 aaatcgtgtcacgtttttcccagatcgtgtcacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaaa 19495690  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || || ||| |||||||||||| ||||||||    
T  19495689 tcgtggcacgttttcccaaaattgtgtcacg 19495659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 6570412 - 6570284
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||| ||||||||| ||  |||||||||||||  |||| ||||||  ||||||||||| | |||||||||||| |||||| ||| |||| ||| |||||    
T  6570412 caaaaacgtgtcacgattggccaaatcgtgacacggttgatgcgtatgacccaaggtacgatcaaccttatcctaaaaacgtgtcaagcatgccaaaaat 6570313  T
Q  152 cttgtcacattttcccaaaatcgtgtcac 180  Q
    | ||||||  || || ||||| |||||||    
T  6570312 cgtgtcacgattgcctaaaattgtgtcac 6570284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 4178595 - 4178464
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| |||| || ||   ||| ||||||| | ||||||||| ||||||||||||||||||| |  | | | |||||| |||    
T  4178595 caaaatcgtgtcacgtttttccccaatcttgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgcctaacaagccaaaa 4178496  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| ||||||  ||||||||||||||||||||    
T  4178495 atcgtgtcacgatttcccaaaatcgtgtcacg 4178464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 30026391 - 30026477
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| || |||||||| ||||||||||||||| ||||| | || |||||| ||||||| |||||| ||| ||||||||| |||||||    
T  30026391 cgtacgactcaaggtacgaccaaccttatcctg-aaacgtgcccggcaagctgaaaatcgtgtcacgtttccccaaaatcatgtcacg 30026477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 48599840 - 48599923
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgaca 84  Q
    ||||||||||||||| ||| | |||||||||||   |||||||||| ||| |||||| |||||| | |||||| ||||||||||    
T  48599840 gcttacccaacaaatgggtaaaagaatgcatatattgtgttcagattcggacaaaattgtgtcatgatttccccaatcgtgaca 48599923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 2479719 - 2479796
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| ||||| || ||   ||| ||||||| ||||||||||| ||||||||||||||||||||    
T  2479719 aaaatcgtgccacgttttcc-aaatcatgccatgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaac 2479796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 44847839 - 44847762
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| | ||||| ||||||||||| ||||||||||||||||||||    
T  44847839 aaaatcgtgccacgttttcc-aaatcgtgccacgattgatacgtacgacccaaggtacgaccaaccttatcctgaaaac 44847762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 47264026 - 47264103
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| |||  ||| | ||||| ||||||| ||| ||||||||||||||||||||    
T  47264026 aaaatcgtgccacgttttcc-aaatcgtgtcaagattgatacgtacgacccaagatacgaccaaccttatcctgaaaac 47264103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 79773 - 79902
Alignment:
Q  55 aatcgtgtcacgttttc-ccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagcc-gaaaat 151  Q
    ||||||||||| ||||  ||||||||||||    ||||||| ||  |||||| |||| ||||||||||||||||||| ||   ||||||||   ||||||    
T  79773 aatcgtgtcacattttgtccaaatcgtgacgtgattggtgcatatgacccaatgtacgaccaaccttatcctgaaaaacgtacccagcaagtttgaaaat 79872  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||||| ||||||||||| ||||    
T  79873 cttgtcacatttttccaaaatcgtgacacg 79902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 21989290 - 21989369
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    |||||||||||||| |||||| ||||| |||||   ||| ||||||  ||||||||||| | |||||||||||||||||||    
T  21989290 caaaatcgtgtcacattttcc-aaatcatgacacgattgctgcgtatgacccaaggtacgatcaaccttatcctgaaaacg 21989369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 29608386 - 29608296
Alignment:
Q  8 caacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtac 98  Q
    ||||| || ||||| ||||||| |||   |||||||||||||| ||||||||||||| | ||||| |||| ||||||   |||||||||||    
T  29608386 caacatatgggtcaaagaatgcttatattgtgttcagatccggacaaaatcgtgtcatgatttcctaaattgtgacacgtttggtgcgtac 29608296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 31733311 - 31733357
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtac 98  Q
    ||||||||||||||||||||||||||||| |||   |||||||||||    
T  31733311 caaaatcgtgtcacgttttcccaaatcgttacacgtttggtgcgtac 31733357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 31733354 - 31733420
Alignment:
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||| ||||||||||||||||||||  | ||||||||||||||||  |||||| ||| || ||||||    
T  31733354 gtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaattgtgtcacgtttccctaaaatc 31733420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 263
Target Start/End: Complemental strand, 48491250 - 48491208
Alignment:
Q  221 tcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  48491250 tcgtgacacggttgccaaatcgtgtcacgattcttcactttct 48491208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 24515110 - 24515187
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    |||||||||| |||||| ||| ||||||| ||   ||| ||||||| | ||||||||| |||||||||||||||||||    
T  24515110 aaatcgtgtcgcgtttttccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaa 24515187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 34311334 - 34311379
Alignment:
Q  218 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    |||||||||||||  || ||||||||||||||||||||| ||||||    
T  34311334 aaatcgtgacacgtttgccaaatcgtgtcacgattcttcactttct 34311379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2361487 - 2361555
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttt 69  Q
    |||| |||||||||| ||||| ||||||| |||   ||||||||||| || |||||||||| |||||||    
T  2361487 gcttgcccaacaaatgggtcaaagaatgcttataatgtgttcagatctggacaaaatcgtgacacgttt 2361555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 30025081 - 30025113
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgaca 84  Q
    ||||||||||||||||||| |||||||||||||    
T  30025081 caaaatcgtgtcacgttttgccaaatcgtgaca 30025113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 6980 - 6848
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcc-caaatcgtgacaatgttggtgcgtaca 99  Q
    ||||||||||||||| ||||| |||||||||||  |||||||| ||||| |||||||||| ||||||||||| ||||||||||||  ||||||||||||     
T  6980 gcttacccaacaaatgggtcaaagaatgcatataaagtgttcatatccgagcaaaatcgtatcacgttttccacaaatcgtgacatggttggtgcgtacg 6881  T
Q  100 acccaaggtacaaccaaccttatcctgaaaacg 132  Q
    |||||||||||||||||||||||||||||||||    
T  6880 acccaaggtacaaccaaccttatcctgaaaacg 6848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 37033585 - 37033765
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    |||||| |||||||  ||||| ||||||| |||   |||||||||||||| |||||| |||||||| |||||||||||||||||   ||||||||||| |    
T  37033585 gcttactcaacaaaagggtcaaagaatgcttatattgtgttcagatccggacaaaattgtgtcacgatttcccaaatcgtgacacgtttggtgcgtacga 37033684  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||||||||||||||||||||||||  | || ||||| |||||||| |||||  ||| || ||||||||||||||    
T  37033685 cccaaggtacaaccaaccttatcctgaaaacttgccctgcaaggcgaaaatcgtgtcatgtttcccgaaaatcgtgtcacg 37033765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 13547605 - 13547754
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||| ||||||| ||||| | |||||||||| |||||||||||||||| |||||||||| | |||||||||||||||||||  |||||||||||| |    
T  13547605 gcttaccaaacaaatgggtcaaaaaatgcatatgtagtgttcagatccgggtaaaatcgtgttatgttttcccaaatcgtgacacggttggtgcgtacga 13547704  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||| |||||||||||  |||||||| | ||||||||| ||||||    
T  13547705 cccaaggtacgaccaaccttat-ttgaaaacgtgcccagcaagctgaaaat 13547754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 13549516 - 13549665
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||| ||||||| ||||| | |||||||||| |||||||||||||||| |||||||||| | |||||||||||||||||||  |||||||||||| |    
T  13549516 gcttaccaaacaaatgggtcaaaaaatgcatatgtagtgttcagatccgggtaaaatcgtgttatgttttcccaaatcgtgacacggttggtgcgtacga 13549615  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||| |||||||||||  |||||||| | ||||||||| ||||||    
T  13549616 cccaaggtacgaccaaccttat-ttgaaaacgtgcccagcaagctgaaaat 13549665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 193264 - 193086
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| ||||| ||||| | |||   |||||||||||||| ||||||||||||||| |||||||||||| ||||   ||||||||||| |    
T  193264 gcttacccaacaaatgggtcaaagaatacttatattgtgttcagatccggacaaaatcgtgtcacgatttcccaaatcgcgacacgtttggtgcgtacga 193165  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtca 179  Q
    |||||||||| ||||| |||||||| |||||  | ||||||||||||||||  | |||| |||| ||||||| ||||||    
T  193164 cccaaggtacgaccaatcttatcctaaaaacttgcccagcaagccgaaaatggtatcacgtttttccaaaattgtgtca 193086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 44454978 - 44454849
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||| |||||||| |||||||||||||   || |||||||| |||||||||||||||||||||||| |||||||  | ||||||||||||||||    
T  44454978 caaaatcgtgccacgttttgccaaatcgtgacacgtttagtgcgtacgacccaaggtacaaccaaccttatcttgaaaacttgcccagcaagccgaaaat 44454879  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| ||| |||||||||||||||||    
T  44454878 cgtgtcacgtttccccaaaatcgtgtcacg 44454849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 31659057 - 31658928
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||| |||| |||||||||||||   ||||||||||| ||||||||||||||||||||||||||||||||    |||||||||  |||||    
T  31659057 caaaatcgtgtcacattttaccaaatcgtgacacgtttggtgcgtacgacccaaggtacaaccaaccttatcctgaaaactttcccagcaagcaaaaaat 31658958  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
      |||||| |||||||||||||||||||||    
T  31658957 tgtgtcacgttttcccaaaatcgtgtcacg 31658928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 28220575 - 28220705
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagc-aagccgaaaa 150  Q
    |||||||||||||||||||||||||||||||||   || |||||||| ||||||||||| |||||||||||| | || ||  |||  || ||||||||||    
T  28220575 caaaatcgtgtcacgttttcccaaatcgtgacacgttttgtgcgtacgacccaaggtacgaccaaccttatcttaaatacttgtcgtgcaaagccgaaaa 28220674  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||||||||    
T  28220675 tcgtgtcacgttttcccaaaatcgtgtcacg 28220705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 49918168 - 49918039
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||| ||||||||||||||||||   |||||| |||| ||||||||||  ||||||||||||||||||||| | ||||||||   |||||    
T  49918168 caaaatcgtgtcacattttcccaaatcgtgacacgattggtgtgtacgacccaaggtatgaccaaccttatcctgaaaacgtgcccagcaagttaaaaat 49918069  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||| | ||||||||||||||    
T  49918068 cgtgtcacgtttttcgaaaatcgtgtcacg 49918039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 30476797 - 30476904
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||||||||||||   |||||| |||| ||||||||| |||||||||||||| |||||||  | ||||||| ||||||||    
T  30476797 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgtgtacgacccaaggttcaaccaaccttatcttgaaaacttgcccagcaaaccgaaaat 30476896  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  30476897 cgtgtcac 30476904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 13598782 - 13598904
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||  |||||| ||||||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   |||||    
T  13598782 caaaatcgtgtcacgtttgtccaaattgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaa 13598881  T
Q  151 tcttgtcacattttcccaaaatc 173  Q
    || ||||||||||||||||||||    
T  13598882 tcgtgtcacattttcccaaaatc 13598904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 28223770 - 28223900
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagc-aagccgaaaa 150  Q
    |||||||||||||||||||||||||| ||||||   || |||||||| ||||||||||| |||||||||||| | || ||  |||  || ||||||||||    
T  28223770 caaaatcgtgtcacgttttcccaaattgtgacacgttttgtgcgtacgacccaaggtacgaccaaccttatcttaaatacttgtcgtgcaaagccgaaaa 28223869  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||||||||    
T  28223870 tcgtgtcacgttttcccaaaatcgtgtcacg 28223900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 1833341 - 1833212
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtc-cagcaagccgaaaa 150  Q
    |||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||  |||||||||||| ||||||  |  | ||||||||| ||||    
T  1833341 caaaatcgtgtcacgttttcgcaaatcgtgacacgtttggtgcgtacaacccaaggtatgaccaaccttatcttgaaaaatgtactcagcaagccaaaaa 1833242  T
Q  151 tcttgtcacattttcccaaaatcgtgtcac 180  Q
    || ||| |  ||||||||||||||||||||    
T  1833241 tcgtgttatgttttcccaaaatcgtgtcac 1833212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 10925042 - 10924913
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||| |||||||||||||  |||| ||||||  ||||||||||  |||||| ||||  |||||||  | | | ||||||||||||    
T  10925042 caaaatcgtgtcacgttttgccaaatcgtgacacggttgatgcgtatgacccaaggtatgaccaactttattttgaaaacttgcctaccaagccgaaaat 10924943  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | ||||||||||| ||||||||||||||||    
T  10924942 cgtgtcacatttttccaaaatcgtgtcacg 10924913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 42298542 - 42298642
Alignment:
Q  167 caaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttcttaa 266  Q
    |||||||||||||| |||||||| ||| ||||| |||||||||  |||||||||||||||||||| || |||||||||||| |||||||| ||||| |||    
T  42298542 caaaatcgtgtcacattttgccttcagaaccaaacatgcattcggcatcagaaatcgtgacacggttgccaaatcgtgtcatgattcttcactttcataa 42298641  T
Q  267 a 267  Q
    |    
T  42298642 a 42298642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 37879480 - 37879587
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||||||||| | ||||||||||| |||||||||||||| |||||  |||||| |||| ||||||| ||||||||||| ||||||||    
T  37879480 aaatcgtgacatgtttggtgcgtgcgacccaaggtacgaccaaccttatcctaaaaacttgtccagtaagctgaaaatcgtgtcacatttttccaaaatc 37879579  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  37879580 gtgtcacg 37879587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 4552997 - 4553126
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||| ||||||||||||| |||||||||||||  |||| ||||||| || || | ||| || |||||||||||||||||| ||| | |||| |||||||    
T  4552997 caaaaacgtgtcacgttttgccaaatcgtgacacggttgatgcgtacgactcacgatacgactaaccttatcctgaaaacgtgtcaaacaagtcgaaaat 4553096  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | | |||| ||||| |||||||||||||||    
T  4553097 catatcacgttttctcaaaatcgtgtcacg 4553126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 29135847 - 29135762
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 159  Q
    |||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||| ||||||| ||||||    
T  29135847 aaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagctgaaaatcatgtcac 29135762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 3156636 - 3156552
Alignment:
Q  102 ccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacgttttg 186  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || |||||| ||| |  ||||||||||||||||||||| ||||    
T  3156636 ccaaggtacgaccaaccttatcctgaaaacgtgtccagcaaaccaaaaatcgtgttatgttttcccaaaatcgtgtcacgatttg 3156552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 11348298 - 11348191
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||||||||||| | |||| |||| ||||||||||||||||||||  | ||| ||||||||||||| |||||| |||  ||||||||    
T  11348298 aaatcgtgacacgtttggtgcgtacgatccaatgtacgaccaaccttatcctgaaaacttgcccaacaagccgaaaatcgtgtcacgtttctccaaaatc 11348199  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  11348198 gtgtcacg 11348191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 37070157 - 37070279
Alignment:
Q  60 tgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtca 158  Q
    ||||||| ||| |||||||||| ||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||| ||||   ||||||| |||||    
T  37070157 tgtcacgattttccaaatcgtggcacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaatcgtgtca 37070256  T
Q  159 cattttcccaaaatcgtgtcacg 181  Q
    | |||||||||||||||| ||||    
T  37070257 cgttttcccaaaatcgtgacacg 37070279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 3206805 - 3206675
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggta-caaccaaccttatcctgaaaa-cgggtccagcaagccgaaaa 150  Q
    ||||||||||||||||| ||||||| ||| ||   ||| ||||||| |||||||||| | |||||||||||||| |||| |  | |||||||| ||||||    
T  3206805 aaatcgtgtcacgtttttcccaaattgtgtcacgattgatgcgtacgacccaaggtaacgaccaaccttatcctaaaaaacttgcccagcaagtcgaaaa 3206706  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||| ||||||||    
T  3206705 tcgtgtcacgttttcccaaaattgtgtcacg 3206675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 3282089 - 3282218
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||| | |||||||| ||   ||||||||||| ||||||||||  |||||||||||| ||||||||   ||||||||   |||||    
T  3282089 caaaatcgtgtcacgtttttc-aaatcgtggcacgattggtgcgtacgacccaaggtatgaccaaccttatcttgaaaacgtacccagcaagtttgaaaa 3282187  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| ||||| |||||||||| ||||    
T  3282188 tcgtgtcacgttttctcaaaatcgtgacacg 3282218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 29652195 - 29652273
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||| ||||||||||  |||||||||||||   |||||| |||| ||||||||||| |||||||||||||||||||    
T  29652195 caaaatcatgtcacgtttgtccaaatcgtgacacgattggtgtgtacgacccaaggtacgaccaaccttatcctgaaaa 29652273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 21536285 - 21536206
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    ||||||||||||||||||||| |||||| | ||   ||||||||||| ||||||||||| |||||||| ||||||||||||    
T  21536285 caaaatcgtgtcacgttttcc-aaatcggggcacgattggtgcgtacgacccaaggtacgaccaacctcatcctgaaaacg 21536206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 20762490 - 20762361
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||| | | | ||||||| ||||||||||||||||||| |  | ||| |||||| |||||    
T  20762490 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgttcgatcaaaggtacgaccaaccttatcctgaaaatcttgcccaacaagccaaaaat 20762391  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | ||||||  ||||||||||||||||||||    
T  20762390 cgtgtcacgatttcccaaaatcgtgtcacg 20762361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37879427 - 37879487
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtg 61  Q
    ||||||||||||||| ||||| |||||||||||   |||||||||||||| ||||||||||    
T  37879427 gcttacccaacaaatgggtcaaagaatgcatatattgtgttcagatccggacaaaatcgtg 37879487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 3189131 - 3189040
Alignment:
Q  92 tgcgtacaacccaaggta-caaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||| |||||||||| | |||||||||||||| |||| |  | |||||||| |||||||| |||||| |||||||||||| ||||||||    
T  3189131 tgcgtacgacccaaggtaacgaccaaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacg 3189040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 3197948 - 3197857
Alignment:
Q  92 tgcgtacaacccaaggta-caaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||| |||||||||| | |||||||||||||| |||| |  | |||||||| |||||||| |||||| |||||||||||| ||||||||    
T  3197948 tgcgtacgacccaaggtaacgaccaaccttatcctaaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacg 3197857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 13604336 - 13604259
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| | ||||| ||||||||||| ||||||||||||||||||||    
T  13604336 aaaatcgtgccacgttttcc-aaatcgtgtcacgattgatacgtacgacccaaggtacgaccaaccttatcctgaaaac 13604259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 13316666 - 13316775
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| | ||||| ||   ||| ||||||| | ||||||||| ||||||||||||||||||| |  | |||||||||| |||    
T  13316666 caaaatcgtgtcacgtttttccccactcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 13316765  T
Q  150 atcttgtcac 159  Q
    ||| ||||||    
T  13316766 atcgtgtcac 13316775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 13659694 - 13659778
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| ||||| ||||| |||||||||||   |  |||| ||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  13659694 cgtacgacccacggtacgaccaaccttat---gtcaacgtgtcaagcaagccgaaaatcgtgacacattttcccaaaatcgtatcacg 13659778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 15820124 - 15820048
Alignment:
Q  54 aaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||| | || || |||||| ||||  |||| ||||||| ||||||||||| |||||||||||||| ||||    
T  15820124 aaatcgtgtcatggttgccaaaatcgagacatggttgatgcgtacgacccaaggtacgaccaaccttatcctaaaaa 15820048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 22819852 - 22819940
Alignment:
Q  92 tgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcac 180  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||| ||| | || ||  |||||| ||||||| |||| ||||||| ||||||    
T  22819852 tgcgtacgacccaaggtacgaccaaacttattctgaaaacgtgtcaaacatgcgaaaaatcatgtcacagtttctcaaaatcatgtcac 22819940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 16455464 - 16455385
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    |||| ||||||||| ||  |||||||||| ||  |||| ||||||| ||||||||||| | ||| |||||||||||||||    
T  16455464 aaaaacgtgtcacgattggccaaatcgtgtcacggttgatgcgtacgacccaaggtacgagcaaacttatcctgaaaacg 16455385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 16124328 - 16124295
Alignment:
Q  99 aacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    |||||||||||| |||||||||||||||||||||    
T  16124328 aacccaaggtacgaccaaccttatcctgaaaacg 16124295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 27015168 - 27015026
Alignment:
Q  17 ggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaa 116  Q
    |||||||||||||||||   |||||||||||||| ||||||||||||||| |||||||||||||||||   ||||||||||| ||||||||||| |||||    
T  27015168 ggtcatagaatgcatatattgtgttcagatccggacaaaatcgtgtcacgatttcccaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaa 27015069  T
Q  117 ccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 159  Q
    |||||||||||||||  | ||| ||||| ||||||| ||||||    
T  27015068 ccttatcctgaaaacatgcccaacaagctgaaaatcgtgtcac 27015026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 42426584 - 42426713
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||| ||||||||    
T  42426584 caaaattgtgtcacgttttcccaaatcgtgacatgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgcccagcaaaccgaaaat 42426683  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
      |||||| |||||||||||||||||||||    
T  42426684 tgtgtcacgttttcccaaaatcgtgtcacg 42426713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 5057666 - 5057521
Alignment:
Q  36 agtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggt 135  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||  |||| ||||||| ||| ||||||| ||||||||||||||||||||  |     
T  5057666 agtgttcagatccggacaaaatcgtgtcacgttttcccaaattgtgacacggttgatgcgtacgaccaaaggtacgaccaaccttatcctgaaaacttgc 5057567  T
Q  136 ccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
     || |||| |||||||  |||||| |||| ||||||||||||||||    
T  5057566 tcaacaagtcgaaaattgtgtcacgttttaccaaaatcgtgtcacg 5057521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 13488022 - 13487895
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||| ||||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  13488022 caaaattgtgtcacgttttcccaaatcgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgcccagcaagccgaaaat 13487923  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    |  ||    |||||||||||||||||||||    
T  13487922 c--gtgctgttttcccaaaatcgtgtcacg 13487895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 32636643 - 32636513
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctg-aaaacgggtccagcaagccgaaaa 150  Q
    ||||||| |||||||||||||||||||||||||   ||||||||||  ||||||||||| ||||||||||||||| |||||  | |||||||| ||||||    
T  32636643 caaaatcatgtcacgttttcccaaatcgtgacacgtttggtgcgtaagacccaaggtacgaccaaccttatcctgaaaaacttgcccagcaagtcgaaaa 32636544  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || || ||| |||||||||||||||||||||    
T  32636543 tcgtgccacgttttcccaaaatcgtgtcacg 32636513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 19806225 - 19806118
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||| ||||||||||| |||||||||||||| |||||| | | ||||||||||||||    
T  19806225 caaaatcgtgtcacgttttcccaagtcgtgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctaaaaacgtgcctagcaagccgaaaat 19806126  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  19806125 cgtgtcac 19806118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 16650971 - 16651098
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||| |||| |||||||||||||  |||||||||||| | ||||||||| |||||||||||||||||||||   ||| ||||    ||||    
T  16650971 caaaatcgtgtcacattttgccaaatcgtgacacggttggtgcgtacgatccaaggtacgaccaaccttatcctgaaaacgtacccaacaagttataaat 16651070  T
Q  152 cttgtcacattttcccaaaatcgtgtca 179  Q
    | |||||| |||||||||||||||||||    
T  16651071 cgtgtcacgttttcccaaaatcgtgtca 16651098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 38746657 - 38746535
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    |||||||||||||||  |||| |||||||||||   |||||||||||||  ||||||||||||| | |||||||||| ||||||   ||||||||||| |    
T  38746657 gcttacccaacaaatgagtcaaagaatgcatatattgtgttcagatccgaacaaaatcgtgtcatgatttcccaaattgtgacacgtttggtgcgtacga 38746558  T
Q  101 cccaaggtacaaccaaccttatc 123  Q
    |||||||||| ||||||||||||    
T  38746557 cccaaggtacgaccaaccttatc 38746535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 11916687 - 11916557
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    |||||||||||||||||||| |||||||||| |   ||||||||||| ||||||||||| |||||||| |||||||||||    ||| ||||   |||||    
T  11916687 caaaatcgtgtcacgttttctcaaatcgtgatacgattggtgcgtacgacccaaggtacgaccaacctgatcctgaaaacatacccaacaagtttgaaaa 11916588  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||| ||||    
T  11916587 tcgtgtcacgttttcccaaaatcgtgacacg 11916557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 535700 - 535615
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 159  Q
    |||||||||||   ||||||| ||| ||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  535700 aaatcgtgacacgtttggtgcatacgacccaaggtacgaccaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcac 535615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 39468917 - 39468988
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcac 159  Q
    ||||||| ||| ||||||||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  39468917 ttggtgcatacgacccaaggtacgaccaaccttatcctaaaaacgtgtccagcaagccgaaaatcgtgtcac 39468988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 13239572 - 13239442
Alignment:
Q  52 caaaatcgtgtcacgttttccca-aatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaa 150  Q
    |||||| ||||||||||||||   ||||||| ||   ||| ||||||| ||||||||||| ||||||||||||||||||||  |||||||||| | || |    
T  13239572 caaaattgtgtcacgttttccatcaatcgtgtcacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaacttgtccagcaagtcaaaga 13239473  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| ||| ||||||||| |||||||    
T  13239472 tcgtgtcacgtttacccaaaatcttgtcacg 13239442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 14520612 - 14520733
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||||| |||||||||||   ||  ||||||| ||||||||||| |||||||||||||||||||||   ||| ||||   |||||    
T  14520612 caaaatcgtgtcacgttttcc-aaatcgtgacacgattaatgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaa 14520710  T
Q  151 tcttgtcacattttcccaaaatc 173  Q
    || |||||| |||||||||||||    
T  14520711 tcgtgtcacgttttcccaaaatc 14520733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 40146825 - 40146739
Alignment:
Q  95 gtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||| |||||| || ||||||||||| | ||| ||||| |||||||  |||||||||||||||||||||||||||    
T  40146825 gtacgacccaaggtacgaccaactttttcctgaaaacgtgaccaacaagctgaaaatcgagtcacattttcccaaaatcgtgtcacg 40146739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 31004868 - 31004739
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcct-gaaaacgggtccagcaagccgaaaat 151  Q
    |||| ||||||||||||  |||||||||||||   ||||||||||| |||||| |||||||||||||||||||  |||||| | ||||||||  ||| ||    
T  31004868 aaaaacgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaagtacaaccaaccttatcctaaaaaacgtgcccagcaagttgaatat 31004769  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | | |||| |||||||| ||||||| ||||    
T  31004768 cgtatcacgttttcccacaatcgtgacacg 31004739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 12083892 - 12083813
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacg 132  Q
    |||||| |||||||||||||| |||||||||||   ||||||| ||| ||||||||||| |||||||||||||||||||||    
T  12083892 caaaattgtgtcacgttttcc-aaatcgtgacacgattggtgcatacgacccaaggtacgaccaaccttatcctgaaaacg 12083813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 42428822 - 42428896
Alignment:
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| |||||||||||||| |||||  | |||||||||| |||||| |||||| |||||||||||||||||||||    
T  42428822 gtacgaccaaccttatcctaaaaacttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatcgtgtcacg 42428896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 38746529 - 38746460
Alignment:
Q  112 accaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||| |||| ||||||  ||||||||    
T  38746529 accaaccttatcctgaaaacttgtccagcaagccgaaaatcgtgtcacgtttttccaaaaatgtgtcacg 38746460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 16649972 - 16650044
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcc 124  Q
    ||||||| |||||| |||| |||||||||||||  |||||||||||| | ||||||||| |||||||||||||    
T  16649972 caaaatcatgtcacattttgccaaatcgtgacacggttggtgcgtacgatccaaggtacgaccaaccttatcc 16650044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 30683312 - 30683386
Alignment:
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||||  | | |||||| |||||||| |||||| |||||||||||| ||||||||    
T  30683312 gtacgaccaaccttatcctgaaaacttgcctagcaagtcgaaaatcgtgtcacgttttcccaaaattgtgtcacg 30683386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 37438925 - 37438835
Alignment:
Q  92 tgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||| ||||||||||| || |||||||||||||||| |  | ||| |||||| |||||| |||||| ||||||||||||| |||||||    
T  37438925 tgcgtacgacccaaggtacgacaaaccttatcctgaaaatcttgcccaacaagccaaaaatcgtgtcacgttttcccaaaatcatgtcacg 37438835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 25412580 - 25412473
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| | ||||||||| ||||||||||||||||||| |  | |||||||||| |||||    
T  25412580 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaat 25412481  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  25412480 cgtgtcac 25412473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 533588 - 533542
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtac 98  Q
    |||||||||||||||||||||||||||||||||   |||||||||||    
T  533588 caaaatcgtgtcacgttttcccaaatcgtgacacgtttggtgcgtac 533542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 13342881 - 13342772
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| ||||||| ||   ||| ||||||| | | ||||||| ||||||||||||||||||| |  | |||||||||| |||    
T  13342881 caaaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgatctaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 13342782  T
Q  150 atcttgtcac 159  Q
    ||| ||||||    
T  13342781 atcgtgtcac 13342772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 30182409 - 30182329
Alignment:
Q  52 caaaatcgtgtcacgtttt--cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    |||||||||||||||||||  ||| ||||||| ||   ||| ||||||| | ||||||||| |||||||||||||||||||    
T  30182409 caaaatcgtgtcacgtttttcccccaatcgtgccacgattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaa 30182329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 9353048 - 9352971
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| |  |||| ||||||||||| ||||||||||||||||||||    
T  9353048 aaaatcgtgccacgttttcc-aaatcgtgccacgattgatatgtacgacccaaggtacgaccaaccttatcctgaaaac 9352971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 36932023 - 36931986
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  36932023 cgtacgacccaaggtacgaccaaccttatcctgaaaac 36931986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 5e-33; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 35447400 - 35447575
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaa 100  Q
    ||||||||||||||| |||||| || ||| ||   ||||||||||||||| ||||||||||||||| |||||| ||||||||||   ||||||||||| |    
T  35447400 gcttacccaacaaatgggtcatggagtgcttacatagtgttcagatccggacaaaatcgtgtcacgatttccc-aatcgtgacacgtttggtgcgtacga 35447498  T
Q  101 cccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgt 177  Q
    |||||||||| | |||||||||| |||||||  | ||  ||| |||| |||| ||||||||||||||||||||||||    
T  35447499 cccaaggtacgagcaaccttatcttgaaaacttgcccgacaaaccgataatcgtgtcacattttcccaaaatcgtgt 35447575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 2837193 - 2837322
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||| ||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||||||||||    ||||||||  ||||||    
T  2837193 caaaatcgtgttacgttttcccaaatcatgacacgtttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacttacccagcaaggtgaaaat 2837292  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||||||||    
T  2837293 cgtgtcacgttttcccaaaatcgtgtcacg 2837322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 34389233 - 34389362
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||||| |||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   |||||    
T  34389233 caaaatcgtgtcacgttttcc-aaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaa 34389331  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||||||||    
T  34389332 tcgtgtcacgttttcccaaaatcgtgtcacg 34389362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 36318358 - 36318488
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    |||||||||||||||||||  ||||| ||||||  |||||||||||| |  |||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  36318358 caaaatcgtgtcacgttttgtcaaattgtgacacggttggtgcgtacgattcaaggtacgaccaaccttatcctgaaaacgtggccagcaagccgaaaat 36318457  T
Q  152 cttgtcacattttccc-aaaatcgtgtcacg 181  Q
    | |||||| ||| ||| ||||||||||||||    
T  36318458 cgtgtcacgtttccccaaaaatcgtgtcacg 36318488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 20522604 - 20522733
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||| ||||||   ||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||  ||||||    
T  20522604 caaaatcgtgtcacgtttgtccaaattgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaat 20522703  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| ||||| |||||||||| ||||    
T  20522704 cgtgtcacgttttctcaaaatcgtgacacg 20522733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 14698724 - 14698600
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  ||||||||||| |  |||||||||||| ||||||||||| ||||||||||||||||||| | | ||| ||||  ||||||    
T  14698724 caaaatcgtgtcacgtttgtccaaatcgtgaaatggttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaatgtgcccaacaagttgaaaat 14698625  T
Q  152 cttgtcacattttcccaaaatcgtg 176  Q
    | |||||| ||||||||||||||||    
T  14698624 cgtgtcacgttttcccaaaatcgtg 14698600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 21630327 - 21630456
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||||  |||||||||||||   |||||| |||| |||||| |||| ||||||||||||||||||||| | ||||||||  ||||||    
T  21630327 caaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgtgtacgacccaaagtacgaccaaccttatcctgaaaacgtgcccagcaagttgaaaat 21630426  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||  |||||||||||| ||| ||||    
T  21630427 cgtgtcatgttttcccaaaattgtgacacg 21630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 1632300 - 1632413
Alignment:
Q  147 aaaatcttgtcacattttcccaaaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacacggatgtcaaatcgtgtc 246  Q
    |||||| |||||| |||||| |||||||||||||||||||||| ||| | ||| ||| |||||  |||||||||||||||||||| || |||| ||||||    
T  1632300 aaaatcgtgtcacgttttcc-aaaatcgtgtcacgttttgccttcagaatcaaacattcattcggcatcagaaatcgtgacacggttgccaaaacgtgtc 1632398  T
Q  247 acgattcttcgcttt 261  Q
    |||||||||| ||||    
T  1632399 acgattcttcacttt 1632413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 33528338 - 33528209
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaat 151  Q
    |||||||||||||||||  |||||||||||||   ||||||||||| ||||||||||| | ||||||||| |||||||||   ||||||||   ||||||    
T  33528338 aaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgatcaaccttattctgaaaacgtacccagcaagtttgaaaat 33528239  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    | |||||| |||||||||||||||| ||||    
T  33528238 cgtgtcacgttttcccaaaatcgtgacacg 33528209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 10706967 - 10706843
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||||| ||| |||| ||   |||||| |||| ||||||||||| |||||||||||||| ||||||  |||||||||   |||||    
T  10706967 caaaatcgtgtcacgttttcc-aaaccgtggcacgattggtgtgtacgacccaaggtacgaccaaccttatccttaaaacgtatccagcaagtttgaaaa 10706869  T
Q  151 tcttgtcacattttcccaaaatcgtg 176  Q
    || |||||| ||||||||||||||||    
T  10706868 tcgtgtcacgttttcccaaaatcgtg 10706843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 17865595 - 17865684
Alignment:
Q  88 ttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaatcttgtcacattttcccaaaatcgtg 176  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   ||||||| |||||||||||||||||||||||    
T  17865595 ttggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaatcgtgtcacattttcccaaaatcgtg 17865684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 36988423 - 36988554
Alignment:
Q  52 caaaatcgtgtcacgttttccca-aatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctg-aaaacgggtccagcaagccgaaa 149  Q
    |||||||||||||| ||||||   ||||||| ||   ||| ||||||| ||||||||||| ||||||||||||||| |||||  | |||||||| |||||    
T  36988423 caaaatcgtgtcacattttccatcaatcgtgtcacaattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaaacttgcccagcaagtcgaaa 36988522  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| |||||| ||||||||||||| |||||||    
T  36988523 atcgtgtcacgttttcccaaaatcatgtcacg 36988554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 45099575 - 45099444
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| ||||||| ||   ||| ||||||| |  |||||||| ||||||||||||||||||| |  | |||||||||| |||    
T  45099575 caaaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgattcaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 45099476  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| ||||||| ||||||||||| ||||||||    
T  45099475 atcgtgtcacaatttcccaaaattgtgtcacg 45099444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 39483258 - 39483388
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    |||||| ||| |||||||  |||||||||||||   ||||||||||  ||||||||||| |||||||||||||||||||||   ||| ||||   |||||    
T  39483258 caaaattgtgccacgtttgtccaaatcgtgacacgattggtgcgtaagacccaaggtacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaa 39483357  T
Q  151 tcttgtcacattttcccaaaatcgtgtcacg 181  Q
    || |||||| |||||||||||||||| ||||    
T  39483358 tcgtgtcacgttttcccaaaatcgtgacacg 39483388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 52 - 176
Target Start/End: Complemental strand, 23078186 - 23078062
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    |||||| |||||||||||||| |||||||| ||   ||||||||||| ||||||| ||| |||||||||||||||||||||   ||| ||||   |||||    
T  23078186 caaaattgtgtcacgttttcc-aaatcgtggcacgattggtgcgtacgacccaagatacgaccaaccttatcctgaaaacgtacccaacaagtttgaaaa 23078088  T
Q  151 tcttgtcacattttcccaaaatcgtg 176  Q
    || |||||| ||||||||||||||||    
T  23078087 tcgtgtcacgttttcccaaaatcgtg 23078062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 33118517 - 33118646
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||||| ||||  |||||||||||||   ||||||||||| |||||||||||  ||||||||||| |||||| | | ||||||||  ||||||    
T  33118517 caaaatcgtgtcatgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacggccaaccttatcttgaaaatgtgcccagcaagttgaaaat 33118616  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
      |||||| |||||| |||| |||| ||||    
T  33118617 tgtgtcacgttttcctaaaaacgtgacacg 33118646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 5723604 - 5723711
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||| ||||||| ||   ||| ||||||| ||||||||||| ||||||||||||||||||| |  |||||||||||| |||||    
T  5723604 aaatcgtgtcacgtttttccccaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaatcttgtccagcaagccaaaaat 5723703  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  5723704 cgtgtcac 5723711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 8389864 - 8389733
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctg-aaaacgggtccagcaag-ccgaaa 149  Q
    ||||||||||||| ||||| ||||||| |||||   ||||||||||| |||||||||||  |||||||||||||| ||||||    |||||||   ||||    
T  8389864 caaaatcgtgtcatgtttttccaaatcatgacatgattggtgcgtacgacccaaggtacgtccaaccttatcctgaaaaacgtactcagcaagtttgaaa 8389765  T
Q  150 atcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||| |||||| |||||||||||||||| ||||    
T  8389764 atcgtgtcacgttttcccaaaatcgtgacacg 8389733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 39284661 - 39284587
Alignment:
Q  107 gtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||||||||||||||||    ||||||||||||||||  |||||| |||||||||||||||||||||    
T  39284661 gtacgaccaaccttatcctgaaaactttcccagcaagccgaaaattgtgtcacgttttcccaaaatcgtgtcacg 39284587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 2334767 - 2334874
Alignment:
Q  54 aaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaat 151  Q
    ||||||||||||||||| ||||||||||| ||   ||| || |||| ||||||||||| ||||||||||||||||||| |  | |||||||||| |||||    
T  2334767 aaatcgtgtcacgtttttcccaaatcgtgtcacgattgatgtgtacgacccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaaat 2334866  T
Q  152 cttgtcac 159  Q
    | ||||||    
T  2334867 cgtgtcac 2334874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 29867644 - 29867569
Alignment:
Q  107 gtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||||||||||||||| |||||| |  | |||||||| |||||||| |||||| |||||||||||||||||||||    
T  29867644 gtacaaccaaccttatcttgaaaaacttgcccagcaagtcgaaaatcgtgtcacgttttcccaaaatcgtgtcacg 29867569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 36206013 - 36206092
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    ||||||||||||||||||| ||| ||||||| ||   ||| ||||||||| ||||||||| |||||||||||||||||||    
T  36206013 caaaatcgtgtcacgtttttccccaatcgtgccacaattgatgcgtacaatccaaggtacgaccaaccttatcctgaaaa 36206092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 28258891 - 28258814
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| ||||||| ||||||||||| ||||||||||||||||||||    
T  28258891 aaaatcgtgccacgttttcc-aaatcgtgccacgattgatgcgtacgacccaaggtacgaccaaccttatcctgaaaac 28258814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 4503480 - 4503589
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaa 149  Q
    ||||||||||||||||||| ||| ||||||| ||   ||| ||||||| | ||||||||| ||||||||||||||||||| |  | |||||||||| |||    
T  4503480 caaaatcgtgtcacgtttttccccaatcgtgccacaattgatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 4503579  T
Q  150 atcttgtcac 159  Q
    ||| ||||||    
T  4503580 atcgtgtcac 4503589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 17629082 - 17629022
Alignment:
Q  169 aaatcgtgtcacgttttgcctccaggaccaaccatgcattcaacatcagaaatcgtgacac 229  Q
    ||||||||||||| ||||||||||||| ||||| | |||||  | ||||||||||||||||    
T  17629082 aaatcgtgtcacgatttgcctccaggatcaaccttacattctgcctcagaaatcgtgacac 17629022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 6595406 - 6595473
Alignment:
Q  115 aaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||||||||||||||| |  | |||||||||| |||||| |||||| |||||||||||| ||||||||    
T  6595406 aaccttatcctgaaaatctagcccagcaagccaaaaatcgtgtcacgttttcccaaaattgtgtcacg 6595473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 45726582 - 45726507
Alignment:
Q  1 gcttacccaacaaattggtcatagaatgcatatgcagtgttcagatccgggcaaaatcgtgtcacgttttcccaaa 76  Q
    ||||||||||||||| |||||| || ||| ||   ||||||||||||||  |||||||||||||| ||| ||||||    
T  45726582 gcttacccaacaaatgggtcatggagtgcttacatagtgttcagatccgaacaaaatcgtgtcacatttgcccaaa 45726507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 13569712 - 13569789
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa 130  Q
    |||||||||||||  |||| |||||||||||||   ||||||| ||| | ||||||||| | |||||||||||||||||    
T  13569712 caaaatcgtgtcaaatttttccaaatcgtgacacgattggtgcttacgatccaaggtacga-caaccttatcctgaaaa 13569789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 7450906 - 7450877
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtg 81  Q
    ||||||||||||||||||||||||||||||    
T  7450906 caaaatcgtgtcacgttttcccaaatcgtg 7450877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 45726460 - 45726415
Alignment:
Q  218 aaatcgtgacacggatgtcaaatcgtgtcacgattcttcgctttct 263  Q
    |||||||||||||| || |||||||||||||| |||||| ||||||    
T  45726460 aaatcgtgacacggttgccaaatcgtgtcacgtttcttcactttct 45726415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 39284704 - 39284672
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgaca 84  Q
    ||||||| |||||||||||||||||||||||||    
T  39284704 caaaatcatgtcacgttttcccaaatcgtgaca 39284672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 20764 - 20891
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaat 151  Q
    ||||||||||| ||||||| |||||||||||||   || |||||||| ||||||||||| ||||||||||| || |||||    ||| ||||||||||||    
T  20764 caaaatcgtgttacgttttgccaaatcgtgacacgtttagtgcgtacgacccaaggtacgaccaaccttattctaaaaactttcccaacaagccgaaaat 20863  T
Q  152 cttgtcacattttcccaaaatcgtgtca 179  Q
    | |||||| |||||||||||||||||||    
T  20864 cgtgtcacgttttcccaaaatcgtgtca 20891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 6067 - 6189
Alignment:
Q  52 caaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaa 150  Q
    ||||||||||||||||||  |||||| ||||||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   |||||    
T  6067 caaaatcgtgtcacgtttgtccaaattgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaa 6166  T
Q  151 tcttgtcacattttcccaaaatc 173  Q
    || ||||||||||||||||||||    
T  6167 tcgtgtcacattttcccaaaatc 6189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 2876 - 3005
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaat 151  Q
    |||||||||||||||||  |||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||    ||||||||   ||||||    
T  2876 aaaatcgtgtcacgtttgtccaaatcgtgacacgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacatacccagcaagtttgaaaat 2975  T
Q  152 cttgtcacattttcccaaaatcgtgtcacg 181  Q
    |  ||||| |||||||||||||||| ||||    
T  2976 cgggtcacgttttcccaaaatcgtgacacg 3005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 132993 - 132916
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| | ||||| ||||||||||| ||||||||||||||||||||    
T  132993 aaaatcgtgccacgttttcc-aaatcgtgtcacgattgatacgtacgacccaaggtacgaccaaccttatcctgaaaac 132916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 149455 - 149539
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    ||||| ||||| ||||| |||||||||||   |  |||| ||| ||||||||||||||| || ||||||||||||||||||| |||||    
T  149455 cgtacgacccacggtacgaccaaccttat---gtcaacgtgtcaagcaagccgaaaatcgtgacacattttcccaaaatcgtatcacg 149539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 17635 - 17742
Alignment:
Q  74 aaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaagccgaaaatcttgtcacattttcccaaaatc 173  Q
    |||||||||||   ||||||||||| || || ||||| |||||||||||| ||||| |  | |||||||||| |||||| |||||| |||||||||||||    
T  17635 aaatcgtgacacgtttggtgcgtacgactcagggtacgaccaaccttatcatgaaagcttgcccagcaagccaaaaatcgtgtcacgttttcccaaaatc 17734  T
Q  174 gtgtcacg 181  Q
    ||||||||    
T  17735 gtgtcacg 17742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 36546 - 36413
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaacgggtccagcaag-ccgaaaat 151  Q
    ||||||||| |||||||||| |||||||| ||   ||||||||||| ||||||||||| |||||||||||||||||||||   ||||||||   ||||||    
T  36546 aaaatcgtgccacgttttcc-aaatcgtgccatgattggtgcgtacgacccaaggtacgaccaaccttatcctgaaaacgtacccagcaagtttgaaaat 36448  T
Q  152 cttgtcacattttcccaaaatcgtgtcacgttttg 186  Q
      |||||| ||||| |||||||||| |||| ||||    
T  36447 tgtgtcacgttttcacaaaatcgtgccacgatttg 36413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 43675 - 43598
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| | | ||| ||||||||||| ||||||||||||||||||||    
T  43675 aaaatcgtgccacgttttcc-aaatcgtgccacgattgatacatacgacccaaggtacgaccaaccttatcctgaaaac 43598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 114365 - 114278
Alignment:
Q  92 tgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagccgaaaatcttgtcacattttcccaaaatcgtgtca 179  Q
    ||||||| ||||||||||| |||||||||||||||||||    | |||||||||| |||||| |||||| ||||||||| |||||||||    
T  114365 tgcgtacgacccaaggtaccaccaaccttatcctgaaaattttgcccagcaagcc-aaaatcgtgtcacgttttcccaatatcgtgtca 114278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 434353 - 434221
Alignment:
Q  52 caaaatcgtgtcacgtttt-cccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaa-cgggtccagcaagcc-gaa 148  Q
    |||||||||| |||||||| ||| ||||||| ||   ||  ||||||| | ||||||||| ||||||||||||||||||| |  | ||||||||||  ||    
T  434353 caaaatcgtgccacgtttttccccaatcgtgccacgatttatgcgtacgatccaaggtacgaccaaccttatcctgaaaatcttgcccagcaagccaaaa 434254  T
Q  149 aatcttgtcacattttcccaaaatcgtgtcacg 181  Q
    |||| ||||||  ||||||||||||||||||||    
T  434253 aatcgtgtcacgatttcccaaaatcgtgtcacg 434221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 4998 - 5046
Alignment:
Q  295 atgtacatccaaaggttccaaggacttcactttccatcacaaaccaaaa 343  Q
    ||||||| |||||| ||||||| ||||| ||||||||||||||||||||    
T  4998 atgtacaaccaaagattccaagtacttccctttccatcacaaaccaaaa 5046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 45582 - 45659
Alignment:
Q  53 aaaatcgtgtcacgttttcccaaatcgtgacaatgttggtgcgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||||||| |||||||||| |||||||| ||   ||| |  |||| ||||||||||| ||||||||||||||||||||    
T  45582 aaaatcgtgccacgttttcc-aaatcgtgtcacgattgatatgtacgacccaaggtacgaccaaccttatcctgaaaac 45659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 8091 - 8054
Alignment:
Q  94 cgtacaacccaaggtacaaccaaccttatcctgaaaac 131  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  8091 cgtacgacccaaggtacgaccaaccttatcctgaaaac 8054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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