View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_high_7 (Length: 634)
Name: NF2749_high_7
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 65 - 406
Target Start/End: Original strand, 24915691 - 24916011
Alignment:
| Q |
65 |
actgcttgtgcatgtttatttgtatgtcgcttgtgaattgtgactgcttgtgcaagtttacgtgtgtgctgcttgtgcattgagatcataaaatattttc |
164 |
Q |
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| T |
24915691 |
actgcttgtgcatgtttatttgtgtgtcgcttgtgaattgtgactgcttgtgcaagtttacgtgtgtgctgcttgtgcattgagatcataaaatattttc |
24915790 |
T |
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| Q |
165 |
tcttcactaattaaacaactgctttgttgttagaatagactacctaaatcaatgtttgaagataacaatgatttgtaacaagaggcttttgtttccgaaa |
264 |
Q |
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| T |
24915791 |
tcttcactaattaaacaactactttgttgttagaatagactacctaaatcaatgtttgaagataacaatgatatgt---------------------aaa |
24915869 |
T |
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| Q |
265 |
gggtcactgagaacatgtcatttggtcaattctagtagccgcatcagtattttttaccaagtttacaggctgagttaaggtcacttacaaatagtggagt |
364 |
Q |
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| T |
24915870 |
gggtcactgagaacatgtcatttggtcaattctagtagccgcatcagtattttttacctagtttacaggctgagttaaggtcacttacaaatagtggagt |
24915969 |
T |
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| Q |
365 |
aactaatgtcagaatcaatgtaactagaataatggtttgccc |
406 |
Q |
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| T |
24915970 |
aactaatgtcagaatcaatgtaactagaataatggtttgccc |
24916011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 455 - 616
Target Start/End: Original strand, 24916060 - 24916212
Alignment:
| Q |
455 |
gatgaatgctttgatctgaatatggatgctagtgcagttgtgcttcgattagtggcatttaaagatggtaatatgtccctgcaacaaaaacaaggaaaaa |
554 |
Q |
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| T |
24916060 |
gatgaatgctttgatctgaatatggatgctagtgcagttgtgcttcgattagtggca-ttaaagatggtgatatgtccctgcaacaaaaacaaggaaaaa |
24916158 |
T |
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| Q |
555 |
acattgctactaaagatctcaaaaagttactcattcaagaaagacaacaactctccattaga |
616 |
Q |
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| T |
24916159 |
acattgcta--------ctcaaaaagttactcattcaagaaagacaacaactctccattaga |
24916212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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